Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MHB40_RS23025 Genome accession   NZ_CP152047
Coordinates   4608660..4609610 (-) Length   316 a.a.
NCBI ID   WP_004231947.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL K6-0057     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4603660..4614610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB40_RS23000 (MHB40_23000) - 4604319..4604864 (+) 546 WP_342441834.1 hypothetical protein -
  MHB40_RS23005 (MHB40_23005) - 4605547..4605861 (-) 315 WP_205445937.1 antibiotic biosynthesis monooxygenase -
  MHB40_RS23010 (MHB40_23010) - 4605863..4606891 (-) 1029 WP_205445938.1 siderophore ABC transporter substrate-binding protein -
  MHB40_RS23015 (MHB40_23015) - 4606956..4607717 (-) 762 WP_342533513.1 ABC transporter ATP-binding protein -
  MHB40_RS23020 (MHB40_23020) - 4607714..4608667 (-) 954 WP_342533514.1 iron chelate uptake ABC transporter family permease subunit -
  MHB40_RS23025 (MHB40_23025) ceuB 4608660..4609610 (-) 951 WP_004231947.1 ABC transporter permease Machinery gene
  MHB40_RS23030 (MHB40_23030) - 4609895..4610947 (-) 1053 WP_342533516.1 hypothetical protein -
  MHB40_RS23035 (MHB40_23035) menC 4611000..4612106 (-) 1107 WP_342533517.1 o-succinylbenzoate synthase -
  MHB40_RS23040 (MHB40_23040) - 4612128..4612952 (-) 825 WP_342533518.1 GNAT family N-acetyltransferase -
  MHB40_RS23045 (MHB40_23045) - 4612952..4614097 (-) 1146 WP_342533519.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34796.00 Da        Isoelectric Point: 10.1980

>NTDB_id=986759 MHB40_RS23025 WP_004231947.1 4608660..4609610(-) (ceuB) [Lysinibacillus sp. FSL K6-0057]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=986759 MHB40_RS23025 WP_004231947.1 4608660..4609610(-) (ceuB) [Lysinibacillus sp. FSL K6-0057]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGCTGTCTATTGTGTCGCTATTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTATCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTGGGCGTATTGATTTCAATGATGTTCTTTACGAACGTCACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTCATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTGACAACGTTCTTTGCATACAAGGCAAATATTATC
CAGAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACGTAAGTGTACC
GATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGAGAGGATTTTGCAAAAAACCTTGGTC
TATCCTATAAATTTGTGGTCAATTTAGGCTTAGTGTTGGTAGCTCTTATCTCCACGACAGTGGTGTTAACAGTCGGTATC
ATTCCCTTCCTTGGTTTGATTATTCCGAACATTATTTCACTGTTCAAAGGTGATAATTTGGCGAAAACCTTGCCGCATAC
AGCCTTACTTGGTATGTCATTCTTATTATTCTGCGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATTA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528

Multiple sequence alignment