Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACOCJJ_RS03730 Genome accession   NZ_CP184561
Coordinates   785682..786764 (+) Length   360 a.a.
NCBI ID   WP_103146232.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBTW2018311     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 780682..791764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJJ_RS03710 (ACOCJJ_03710) gdpS 781060..782130 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  ACOCJJ_RS03715 (ACOCJJ_03715) - 782448..783503 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  ACOCJJ_RS03720 (ACOCJJ_03720) - 783667..784308 (-) 642 WP_000192949.1 YigZ family protein -
  ACOCJJ_RS03725 (ACOCJJ_03725) fakB1 784452..785318 (+) 867 WP_000686345.1 fatty acid kinase binding subunit FakB1 -
  ACOCJJ_RS03730 (ACOCJJ_03730) comFA 785682..786764 (+) 1083 WP_103146232.1 DEAD/DEAH box helicase Machinery gene
  ACOCJJ_RS03735 (ACOCJJ_03735) - 786757..787431 (+) 675 WP_001057962.1 ComF family protein -
  ACOCJJ_RS03740 (ACOCJJ_03740) hpf 787492..788064 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACOCJJ_RS03745 (ACOCJJ_03745) secA 788478..791009 (+) 2532 WP_000506529.1 preprotein translocase subunit SecA -
  ACOCJJ_RS03750 (ACOCJJ_03750) - 791051..791170 (+) 120 WP_031774844.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42052.55 Da        Isoelectric Point: 9.6802

>NTDB_id=986736 ACOCJJ_RS03730 WP_103146232.1 785682..786764(+) (comFA) [Staphylococcus aureus strain CBTW2018311]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDVFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=986736 ACOCJJ_RS03730 WP_103146232.1 785682..786764(+) (comFA) [Staphylococcus aureus strain CBTW2018311]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGTCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367