Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHB51_RS12445 Genome accession   NZ_CP152046
Coordinates   2664488..2665864 (+) Length   458 a.a.
NCBI ID   WP_107943502.1    Uniprot ID   -
Organism   Metasolibacillus sp. FSL K6-0083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2659488..2670864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB51_RS12435 (MHB51_12435) - 2660557..2663001 (+) 2445 WP_066168757.1 ATP-dependent Clp protease ATP-binding subunit -
  MHB51_RS12440 (MHB51_12440) - 2663423..2664247 (+) 825 WP_342558282.1 methyl-accepting chemotaxis protein -
  MHB51_RS12445 (MHB51_12445) radA 2664488..2665864 (+) 1377 WP_107943502.1 DNA repair protein RadA Machinery gene
  MHB51_RS12450 (MHB51_12450) - 2666154..2667224 (+) 1071 WP_342558283.1 PIN/TRAM domain-containing protein -
  MHB51_RS12455 (MHB51_12455) ispD 2667236..2667925 (+) 690 WP_066168770.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHB51_RS12460 (MHB51_12460) - 2667971..2669023 (-) 1053 WP_342471589.1 NAD(P)/FAD-dependent oxidoreductase -
  MHB51_RS12465 (MHB51_12465) epsC 2669306..2670247 (+) 942 WP_066168776.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50346.14 Da        Isoelectric Point: 7.4398

>NTDB_id=986725 MHB51_RS12445 WP_107943502.1 2664488..2665864(+) (radA) [Metasolibacillus sp. FSL K6-0083]
MAKKKTKFICNACGYESAKWMGRCPGCGQWNTMVEEVEVIVKGPRGAFQHSSATTQKAVPIMTVETVEEARIVTEMTELN
RVLGGGIVAGSLVLIGGDPGIGKSTLLLQVSALLSNRGQRVLYISGEESIRQTKLRAERLGVKSQELYIYSETNLEFLHQ
TIEEVQPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRLLEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLHGGLKEVLNPSELFLQERSQGVAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGMMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDEAVRATDCFIGEVGLTG
EVRRVSRIEQRVQEAAKLGFQRAFIPASNIGGWDFPPGIQVVGVETIGDSLRLCFNNL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=986725 MHB51_RS12445 WP_107943502.1 2664488..2665864(+) (radA) [Metasolibacillus sp. FSL K6-0083]
ATGGCAAAAAAGAAGACAAAATTTATATGTAATGCATGTGGCTACGAATCGGCGAAGTGGATGGGGCGCTGTCCGGGCTG
TGGGCAGTGGAACACAATGGTGGAGGAAGTGGAGGTTATTGTCAAGGGACCTCGCGGAGCCTTCCAGCATTCTAGTGCAA
CAACGCAAAAGGCTGTGCCGATAATGACTGTGGAAACGGTGGAGGAAGCACGCATTGTTACCGAGATGACGGAATTGAAC
CGTGTGCTGGGGGGCGGTATTGTTGCTGGCTCGCTTGTGTTAATTGGGGGAGACCCAGGCATTGGAAAGTCGACTTTATT
GCTTCAGGTGTCCGCGCTACTTTCCAATCGTGGGCAGCGGGTGCTTTATATTTCTGGGGAGGAATCGATTCGCCAGACAA
AGCTGCGCGCAGAGCGTTTAGGGGTAAAGTCACAGGAGCTATATATATATTCTGAAACGAATTTAGAGTTTTTGCATCAA
ACAATCGAAGAGGTGCAACCGAAGTTTGTCATTGTCGATTCGATTCAAACAGTGCACCATCCAGAGGTGACGAGTGCGCC
GGGAAGTGTTTCGCAAGTGCGTGAGTGTACAGCGGAGCTAATGCGCATTGCGAAAACGAAAAATATTGCGATTTTTCTTG
TGGGGCATGTGACGAAGGAGGGGCAAATTGCTGGTCCCCGCCTTTTAGAGCATATGGTGGATACGGTGCTTTATTTTGAA
GGAGAGCGCCATCATAATCACCGTATTTTGCGTAGCCAAAAAAACCGCTTTGGCTCGACCAATGAGATTGCTATTTTTGA
AATGTTGCACGGTGGTCTAAAGGAAGTATTAAATCCATCTGAATTATTTTTACAGGAGCGTTCACAGGGTGTAGCGGGCT
CGACTATCGTTGCATCGATGGAAGGGACGCGCCCTATTTTAGTGGAAATTCAATCACTTGTCACACCTACAAGCTTTAAT
TACCCAAAACGAATGGCAACGGGCGTAGATCAAAACCGTGTGCAGCTATTAATGGCAGTACTAGAAAAACGCATGGGTAT
GATGTTGCAGGCACAAGATGCTTATATTAAGGTAGCGGGCGGTGTGAAGCTTGATGAGCCAGCGATTGATTTAGCTGTTT
TGACATCGATTGTTTCGAGCTTTAAAGATGAGGCTGTTCGCGCTACAGATTGCTTTATCGGAGAGGTTGGTTTGACGGGG
GAGGTACGTCGAGTTTCACGTATCGAGCAGCGTGTGCAGGAGGCAGCAAAGCTAGGCTTTCAACGAGCTTTTATTCCAGC
ATCGAATATAGGTGGCTGGGACTTCCCACCCGGTATTCAAGTCGTTGGTGTCGAAACGATAGGTGATAGCTTGCGGTTGT
GCTTTAATAATTTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-221)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.769

99.345

0.703
  radA Streptococcus pneumoniae Rx1

61.978

99.345

0.616
  radA Streptococcus pneumoniae D39

61.978

99.345

0.616
  radA Streptococcus pneumoniae R6

61.978

99.345

0.616
  radA Streptococcus pneumoniae TIGR4

61.978

99.345

0.616
  radA Streptococcus mitis SK321

61.978

99.345

0.616
  radA Streptococcus mitis NCTC 12261

61.978

99.345

0.616

Multiple sequence alignment