Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHB51_RS01925 Genome accession   NZ_CP152046
Coordinates   420103..421794 (+) Length   563 a.a.
NCBI ID   WP_107942833.1    Uniprot ID   -
Organism   Metasolibacillus sp. FSL K6-0083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 415103..426794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB51_RS01900 (MHB51_01900) xseB 415300..415527 (+) 228 WP_066162712.1 exodeoxyribonuclease VII small subunit -
  MHB51_RS01905 (MHB51_01905) - 415531..416406 (+) 876 WP_342559455.1 polyprenyl synthetase family protein -
  MHB51_RS01910 (MHB51_01910) dxs 416748..418649 (+) 1902 WP_342558858.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHB51_RS01915 (MHB51_01915) - 418646..419470 (+) 825 WP_342558859.1 TlyA family RNA methyltransferase -
  MHB51_RS01920 (MHB51_01920) argR 419640..420089 (+) 450 WP_066162719.1 transcriptional regulator ArgR -
  MHB51_RS01925 (MHB51_01925) recN 420103..421794 (+) 1692 WP_107942833.1 DNA repair protein RecN Machinery gene
  MHB51_RS01930 (MHB51_01930) - 422072..422998 (+) 927 WP_342558860.1 SpoIVB peptidase S55 domain-containing protein -
  MHB51_RS01935 (MHB51_01935) spo0A 423315..424112 (+) 798 WP_342558861.1 sporulation transcription factor Spo0A -
  MHB51_RS01940 (MHB51_01940) - 424592..426163 (+) 1572 WP_342558862.1 FapA family protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63601.27 Da        Isoelectric Point: 4.6939

>NTDB_id=986702 MHB51_RS01925 WP_107942833.1 420103..421794(+) (recN) [Metasolibacillus sp. FSL K6-0083]
MLRELSIRNFAIIDDLTVSFADGLTVLTGETGAGKSIIIDAVHLLAGGRGSHEFIRHGARKAELGGLFHIMDDHHPVFAK
LDEAGIEYEDGTIILRRDINDNGKSVCRINGKLVPTNVLREIGGSLIDIHGQHENQELMDEKQHINLLDHFAYEELSSFL
AAYNEKYEAYRSLKREVAELSLDEQRMAQRIDLYQFQMNELEEAALKLGEEDALMEERLRLMNFHKIFERASIAYEAISG
EQHGLDYIGNAMSALEDIVSLDEHFKEATEAVTTSFYALQDASYQIKNVLDELEFDAGRLNEVEQRLAQYQTMKRKYGTT
VEEILAYYDKIAAELMQLMNRDETIQKNELRLSQMEEELTQLASTLTEIRKKQALLLSEAIMEQLRVLHMEKAEFIVKFE
SLEGFDAYGKDYVAFYIATNVGEPPKSLPKIASGGELSRMMLALKTIFSSTNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISIHSQVLCISHLPQVAAMADQHYLIKKQVEHDRTFTTVTEIKERARIEEVSRMMSGAEITDLTLQHAQELVEIADARKQ
AMQ

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=986702 MHB51_RS01925 WP_107942833.1 420103..421794(+) (recN) [Metasolibacillus sp. FSL K6-0083]
TTGTTAAGAGAGCTAAGTATTCGAAACTTTGCGATTATAGATGATTTAACAGTGAGCTTTGCGGATGGGTTAACGGTTTT
AACTGGTGAAACGGGTGCAGGAAAGTCCATTATCATTGATGCTGTTCATTTGCTAGCCGGTGGGCGTGGTTCCCATGAAT
TTATTCGCCACGGTGCTAGAAAAGCGGAGCTAGGTGGCTTATTTCATATCATGGATGACCATCACCCTGTCTTTGCAAAA
TTAGACGAAGCCGGAATTGAATATGAGGACGGCACAATTATTTTGCGTCGTGATATTAATGATAATGGCAAAAGCGTTTG
TCGCATCAATGGCAAGCTTGTACCAACTAACGTGTTACGGGAGATTGGTGGTAGCCTTATTGATATACATGGCCAGCATG
AAAATCAAGAATTAATGGATGAAAAGCAGCATATCAACTTACTGGATCATTTCGCTTATGAAGAGCTTTCGTCATTTTTA
GCGGCATATAATGAGAAGTATGAGGCTTATCGTAGCTTAAAGCGTGAAGTGGCTGAGCTTAGTTTAGATGAGCAAAGAAT
GGCACAGCGCATTGATTTATATCAATTTCAAATGAATGAGCTAGAGGAAGCTGCATTAAAGCTCGGGGAAGAAGATGCGC
TAATGGAGGAACGTTTGCGATTAATGAACTTCCATAAAATCTTTGAACGTGCAAGTATTGCCTATGAGGCGATTTCTGGA
GAGCAGCATGGCTTAGATTATATAGGGAATGCGATGTCAGCGCTGGAGGATATCGTTTCATTAGATGAGCATTTTAAAGA
GGCTACTGAGGCAGTGACAACGAGCTTTTATGCATTGCAGGATGCAAGCTATCAAATTAAAAATGTGCTGGACGAATTGG
AATTTGATGCGGGACGTTTAAACGAGGTTGAGCAACGTTTAGCGCAATATCAAACAATGAAGCGCAAATATGGTACAACC
GTTGAAGAAATTTTAGCATATTATGATAAAATAGCGGCTGAGCTAATGCAATTGATGAATCGCGATGAAACAATACAAAA
AAATGAATTGCGCTTAAGTCAAATGGAGGAAGAACTTACACAGCTAGCCTCCACATTAACTGAAATACGTAAAAAGCAAG
CTTTATTACTAAGTGAAGCAATTATGGAACAGTTGCGTGTATTACATATGGAAAAGGCAGAGTTTATTGTCAAATTCGAA
TCCCTTGAAGGATTTGATGCATATGGTAAGGATTATGTGGCATTTTACATTGCGACAAATGTTGGTGAACCACCTAAATC
ATTACCGAAAATTGCATCTGGTGGTGAATTGTCACGTATGATGCTTGCATTAAAGACTATTTTCTCCTCAACAAATGGTA
TTACATCCATTATTTTTGATGAGGTAGATACAGGTGTCAGTGGGCGTGTTGCGCAAGCAATTGCTGAAAAAATCGCAGCG
ATTTCCATCCATTCACAGGTGCTCTGCATTTCTCATTTACCGCAAGTGGCTGCGATGGCAGATCAGCATTATTTAATTAA
AAAGCAAGTAGAGCATGACAGAACATTTACTACGGTTACAGAAATTAAAGAGCGTGCACGCATTGAGGAAGTAAGTCGTA
TGATGAGCGGTGCAGAAATTACCGATTTAACATTGCAGCATGCTCAAGAGCTTGTAGAAATAGCGGACGCAAGAAAACAG
GCAATGCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.265

100

0.533

Multiple sequence alignment