Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHB41_RS16275 Genome accession   NZ_CP152045
Coordinates   3151204..3151893 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL H7-0578     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3146204..3156893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB41_RS16240 (MHB41_16240) - 3146283..3146765 (-) 483 WP_024423619.1 flagellar protein FlgN -
  MHB41_RS16245 (MHB41_16245) flgM 3146784..3147047 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHB41_RS16250 (MHB41_16250) - 3147127..3147546 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  MHB41_RS16255 (MHB41_16255) comFC 3147603..3148259 (-) 657 WP_260983460.1 ComF family protein Machinery gene
  MHB41_RS16260 (MHB41_16260) - 3148286..3148579 (-) 294 WP_024423623.1 competence protein ComFB -
  MHB41_RS16265 (MHB41_16265) comFA 3148628..3150025 (-) 1398 WP_217008717.1 DEAD/DEAH box helicase Machinery gene
  MHB41_RS16270 (MHB41_16270) - 3150146..3150988 (-) 843 WP_214755360.1 DegV family protein -
  MHB41_RS16275 (MHB41_16275) degU 3151204..3151893 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHB41_RS16280 (MHB41_16280) degS 3151958..3153133 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MHB41_RS16285 (MHB41_16285) - 3153354..3154022 (+) 669 WP_012011434.1 YigZ family protein -
  MHB41_RS16290 (MHB41_16290) - 3154007..3155098 (+) 1092 WP_034281103.1 LCP family protein -
  MHB41_RS16295 (MHB41_16295) - 3155134..3156201 (-) 1068 WP_340899906.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=986691 MHB41_RS16275 WP_008348273.1 3151204..3151893(-) (degU) [Bacillus sp. FSL H7-0578]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986691 MHB41_RS16275 WP_008348273.1 3151204..3151893(-) (degU) [Bacillus sp. FSL H7-0578]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACACCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment