Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHI16_RS11730 Genome accession   NZ_CP152044
Coordinates   2297855..2298625 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0923     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2292855..2303625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI16_RS11710 (MHI16_11710) - 2292947..2293768 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MHI16_RS11715 (MHI16_11715) - 2293794..2294432 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  MHI16_RS11720 (MHI16_11720) glyS 2294600..2296645 (-) 2046 WP_268466097.1 glycine--tRNA ligase subunit beta -
  MHI16_RS11725 (MHI16_11725) glyQ 2296638..2297525 (-) 888 WP_058014649.1 glycine--tRNA ligase subunit alpha -
  MHI16_RS11730 (MHI16_11730) recO 2297855..2298625 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  MHI16_RS11735 (MHI16_11735) - 2298661..2298804 (-) 144 WP_003217288.1 YqzL family protein -
  MHI16_RS11740 (MHI16_11740) era 2298953..2299858 (-) 906 WP_058014648.1 GTPase Era -
  MHI16_RS11745 (MHI16_11745) - 2299851..2300249 (-) 399 WP_003217296.1 cytidine deaminase -
  MHI16_RS11750 (MHI16_11750) - 2300363..2300749 (-) 387 WP_044139413.1 diacylglycerol kinase family protein -
  MHI16_RS11755 (MHI16_11755) ybeY 2300727..2301206 (-) 480 WP_058014647.1 rRNA maturation RNase YbeY -
  MHI16_RS11760 (MHI16_11760) - 2301207..2303294 (-) 2088 WP_049754949.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=986613 MHI16_RS11730 WP_034661344.1 2297855..2298625(-) (recO) [Bacillus sp. FSL K6-0923]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=986613 MHI16_RS11730 WP_034661344.1 2297855..2298625(-) (recO) [Bacillus sp. FSL K6-0923]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCGAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTCTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
CCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTGGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTAGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment