Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHI46_RS11700 Genome accession   NZ_CP152042
Coordinates   2273381..2274151 (-) Length   256 a.a.
NCBI ID   WP_059374606.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1000     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2268381..2279151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI46_RS11680 (MHI46_11680) - 2268473..2269294 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MHI46_RS11685 (MHI46_11685) - 2269320..2269958 (-) 639 WP_039180035.1 helix-turn-helix transcriptional regulator -
  MHI46_RS11690 (MHI46_11690) glyS 2270126..2272171 (-) 2046 WP_260774288.1 glycine--tRNA ligase subunit beta -
  MHI46_RS11695 (MHI46_11695) glyQ 2272164..2273051 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  MHI46_RS11700 (MHI46_11700) recO 2273381..2274151 (-) 771 WP_059374606.1 DNA repair protein RecO Machinery gene
  MHI46_RS11705 (MHI46_11705) - 2274187..2274330 (-) 144 WP_003217288.1 YqzL family protein -
  MHI46_RS11710 (MHI46_11710) era 2274479..2275384 (-) 906 WP_007501305.1 GTPase Era -
  MHI46_RS11715 (MHI46_11715) - 2275377..2275775 (-) 399 WP_008356263.1 cytidine deaminase -
  MHI46_RS11720 (MHI46_11720) - 2275889..2276275 (-) 387 WP_048238914.1 diacylglycerol kinase family protein -
  MHI46_RS11725 (MHI46_11725) ybeY 2276253..2276732 (-) 480 WP_059374604.1 rRNA maturation RNase YbeY -
  MHI46_RS11730 (MHI46_11730) - 2276733..2278820 (-) 2088 WP_186304651.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29286.92 Da        Isoelectric Point: 8.1211

>NTDB_id=986493 MHI46_RS11700 WP_059374606.1 2273381..2274151(-) (recO) [Bacillus sp. FSL K6-1000]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELIDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYRLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=986493 MHI46_RS11700 WP_059374606.1 2273381..2274151(-) (recO) [Bacillus sp. FSL K6-1000]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTAATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTTATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTGATTGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGTTATCAGTGATGGGGATGAAACCTGAACTTGATCAATGTGTTCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAGACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTACGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAGCCTCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment