Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   MHI46_RS06625 Genome accession   NZ_CP152042
Coordinates   1308931..1311033 (-) Length   700 a.a.
NCBI ID   WP_059376921.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1000     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303931..1316033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI46_RS06600 (MHI46_06600) - 1304312..1304554 (+) 243 WP_039178071.1 aspartyl-phosphate phosphatase Spo0E family protein -
  MHI46_RS06605 (MHI46_06605) - 1304601..1306106 (-) 1506 WP_228279978.1 ATP-binding protein -
  MHI46_RS06610 (MHI46_06610) - 1306311..1306766 (+) 456 WP_034281539.1 MarR family transcriptional regulator -
  MHI46_RS06615 (MHI46_06615) motB 1306994..1307764 (-) 771 WP_039178076.1 flagellar motor protein MotB -
  MHI46_RS06620 (MHI46_06620) motA 1307757..1308551 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  MHI46_RS06625 (MHI46_06625) clpC 1308931..1311033 (-) 2103 WP_059376921.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  MHI46_RS06630 (MHI46_06630) - 1311278..1312321 (+) 1044 WP_260775879.1 hypothetical protein -
  MHI46_RS06635 (MHI46_06635) queC 1312597..1313253 (+) 657 WP_059376926.1 7-cyano-7-deazaguanine synthase QueC -
  MHI46_RS06640 (MHI46_06640) queD 1313254..1313694 (+) 441 WP_260775880.1 6-carboxytetrahydropterin synthase QueD -
  MHI46_RS06645 (MHI46_06645) queE 1313687..1314418 (+) 732 WP_047202223.1 7-carboxy-7-deazaguanine synthase QueE -
  MHI46_RS06650 (MHI46_06650) queF 1314434..1314931 (+) 498 WP_003211403.1 preQ(1) synthase -
  MHI46_RS06655 (MHI46_06655) - 1315386..1315604 (+) 219 WP_039178087.1 hypothetical protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77915.50 Da        Isoelectric Point: 5.0302

>NTDB_id=986478 MHI46_RS06625 WP_059376921.1 1308931..1311033(-) (clpC) [Bacillus sp. FSL K6-1000]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQQAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTPDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTDKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQDEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDREDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=986478 MHI46_RS06625 WP_059376921.1 1308931..1311033(-) (clpC) [Bacillus sp. FSL K6-1000]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGCAGGCAGGTCATGCCCCAAACATGGAGCAGCCAAAACAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGCTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCAC
TGAAAATTGCGAGCGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTTTCTTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAACTTCAGAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGACGCTTCCAGCCCGTTATCGTGGATGAGCCAACACCAGATGAAGCGATCGACATCTTAAAAGGTATTCAAGATAA
GTACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCCATCAAAGCGTGCGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATCTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCTGCAAGT
GAAGATGAACTGACAAACCGACTTGCGCAAATTGCCGCAGAAAAACAGGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGACAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGCAAACTACAAGCAGACGAACAAACCAAAATG
AAAGAAATTGATGTCCGTCTAAAAGCACGAGTAATTGGGCAGGAGCATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAACATAGACCGACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGCTGGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACACGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCTTACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCAGATGTACAGCATATGTTCCTTCAAA
TCATGGAAGATGGGCGTTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCGCAGATAAAACGGTCAAGGTCGGCTTCCAGTCTGATCAGGACGAAGCGATTGAGGAACAATCACTCATTGA
TTCGCTCAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGATAGCATCATTCAATTTGATTCACTAGACAGAGAGG
ACTTAGTGAAGATTGTTGATCTTCTGCTTAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCATGTTGAAGATCAAATGACAGAGATCCTTCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)

AAA lid domain (AAA_lid_9)

(254-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.64

100

0.597
  clpE Streptococcus mutans UA159

56.199

100

0.596
  clpE Streptococcus pneumoniae Rx1

55.387

100

0.573
  clpE Streptococcus pneumoniae D39

55.387

100

0.573
  clpE Streptococcus pneumoniae R6

55.387

100

0.573
  clpE Streptococcus pneumoniae TIGR4

55.387

100

0.573
  clpC Bacillus subtilis subsp. subtilis str. 168

54.03

95.714

0.517
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.385

92.857

0.44
  clpC Streptococcus thermophilus LMD-9

46.13

92.286

0.426
  clpC Streptococcus thermophilus LMG 18311

45.975

92.286

0.424
  clpC Streptococcus mutans UA159

44.325

93.143

0.413
  clpC Streptococcus pneumoniae TIGR4

43.981

92.571

0.407
  clpC Streptococcus pneumoniae Rx1

44.168

91.857

0.406
  clpC Streptococcus pneumoniae D39

44.168

91.857

0.406

Multiple sequence alignment