Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHH31_RS11665 Genome accession   NZ_CP152041
Coordinates   2276780..2277550 (-) Length   256 a.a.
NCBI ID   WP_342494825.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1033     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2271780..2282550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH31_RS11645 (MHH31_11645) - 2271873..2272694 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MHH31_RS11650 (MHH31_11650) - 2272720..2273358 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  MHH31_RS11655 (MHH31_11655) glyS 2273525..2275570 (-) 2046 WP_342494824.1 glycine--tRNA ligase subunit beta -
  MHH31_RS11660 (MHH31_11660) glyQ 2275563..2276450 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  MHH31_RS11665 (MHH31_11665) recO 2276780..2277550 (-) 771 WP_342494825.1 DNA repair protein RecO Machinery gene
  MHH31_RS11670 (MHH31_11670) - 2277586..2277729 (-) 144 WP_008342408.1 YqzL family protein -
  MHH31_RS11675 (MHH31_11675) era 2277877..2278782 (-) 906 WP_007501305.1 GTPase Era -
  MHH31_RS11680 (MHH31_11680) - 2278775..2279173 (-) 399 WP_008342410.1 cytidine deaminase -
  MHH31_RS11685 (MHH31_11685) - 2279286..2279672 (-) 387 WP_024718818.1 diacylglycerol kinase family protein -
  MHH31_RS11690 (MHH31_11690) ybeY 2279650..2280129 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  MHH31_RS11695 (MHH31_11695) - 2280130..2282217 (-) 2088 WP_205831371.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29371.08 Da        Isoelectric Point: 8.4252

>NTDB_id=986433 MHH31_RS11665 WP_342494825.1 2276780..2277550(-) (recO) [Bacillus sp. FSL K6-1033]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRYLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=986433 MHH31_RS11665 WP_342494825.1 2276780..2277550(-) (recO) [Bacillus sp. FSL K6-1033]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCTATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTATATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment