Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MHH31_RS10195 Genome accession   NZ_CP152041
Coordinates   2015421..2016056 (+) Length   211 a.a.
NCBI ID   WP_342495494.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1033     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2010421..2021056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH31_RS10155 (MHH31_10155) - 2010585..2011703 (+) 1119 WP_234710323.1 NADH-dependent flavin oxidoreductase -
  MHH31_RS10160 (MHH31_10160) - 2011753..2012259 (-) 507 WP_327859433.1 PTS glucose transporter subunit IIA -
  MHH31_RS10165 (MHH31_10165) - 2012428..2012847 (+) 420 WP_116307053.1 Hsp20/alpha crystallin family protein -
  MHH31_RS10170 (MHH31_10170) - 2012869..2013321 (-) 453 WP_017359729.1 YppG family protein -
  MHH31_RS10175 (MHH31_10175) - 2013430..2013801 (-) 372 WP_017359730.1 YppE family protein -
  MHH31_RS10180 (MHH31_10180) - 2013860..2014093 (-) 234 WP_224558417.1 DUF5446 family protein -
  MHH31_RS10185 (MHH31_10185) sspM 2014290..2014394 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  MHH31_RS10190 (MHH31_10190) - 2014418..2015374 (-) 957 WP_047945924.1 DUF2515 domain-containing protein -
  MHH31_RS10195 (MHH31_10195) recU 2015421..2016056 (+) 636 WP_342495494.1 Holliday junction resolvase RecU Machinery gene
  MHH31_RS10200 (MHH31_10200) - 2016076..2018748 (+) 2673 WP_035702944.1 PBP1A family penicillin-binding protein -
  MHH31_RS10205 (MHH31_10205) - 2018784..2019293 (-) 510 WP_178930293.1 YpoC family protein -
  MHH31_RS10210 (MHH31_10210) nth 2019290..2019952 (-) 663 WP_008344602.1 endonuclease III -
  MHH31_RS10215 (MHH31_10215) - 2019970..2020674 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24288.52 Da        Isoelectric Point: 9.6582

>NTDB_id=986427 MHH31_RS10195 WP_342495494.1 2015421..2016056(+) (recU) [Bacillus sp. FSL K6-1033]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHSRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=986427 MHH31_RS10195 WP_342495494.1 2015421..2016056(+) (recU) [Bacillus sp. FSL K6-1033]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAGGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTCACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment