Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   NST80_RS10520 Genome accession   NZ_CP152039
Coordinates   2220293..2221060 (+) Length   255 a.a.
NCBI ID   WP_118172457.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2215293..2226060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS10485 (NST80_10485) - 2215777..2217026 (+) 1250 Protein_2009 ISL3 family transposase -
  NST80_RS10505 (NST80_10505) - 2217608..2218291 (-) 684 WP_013991345.1 YoaK family protein -
  NST80_RS10510 (NST80_10510) rlmH 2218307..2218786 (-) 480 WP_014632473.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NST80_RS10515 (NST80_10515) htrA 2218992..2220227 (+) 1236 WP_013991347.1 trypsin-like peptidase domain-containing protein Regulator
  NST80_RS10520 (NST80_10520) spo0J 2220293..2221060 (+) 768 WP_118172457.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 255 a.a.        Molecular weight: 29219.69 Da        Isoelectric Point: 9.7382

>NTDB_id=986356 NST80_RS10520 WP_118172457.1 2220293..2221060(+) (spo0J) [Streptococcus sp. FSL K6-1323]
MQEQLKALPISDIYPNPFQPRIEFSDEELAELSQSIAENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
AVTDQDSRKQAIIENLQRSNLNPIEEAKAYRSLINELAYSHEELAKAMGKSRPYISNALRLLQLPQEIQTSIENGKLSQG
HARALLAVEDTKKQLTIYHQVLTEKWSVRTLEKRIQGLPKKQKSKKDIHIKDKEKELEKSLGLPVTLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=986356 NST80_RS10520 WP_118172457.1 2220293..2221060(+) (spo0J) [Streptococcus sp. FSL K6-1323]
ATGCAAGAACAACTCAAAGCTTTACCTATTAGTGACATCTATCCCAATCCTTTTCAACCTCGTATAGAGTTCTCTGATGA
AGAATTAGCGGAGCTAAGCCAATCGATTGCAGAAAATGGACTGATACAGCCAATCATTGTCCGAAAATCGGATATTATTG
GCTATGAACTAATTGCTGGGGAAAGACGTTTACGTGCCTGTAAACGTCTAGGAATGACAGAAATCCCTGCAGTTGTAAAG
GCAGTTACAGATCAAGACAGCCGTAAACAAGCTATTATTGAAAATTTACAACGATCGAATCTCAATCCCATTGAAGAAGC
AAAGGCCTATCGTAGTTTAATTAATGAGCTAGCTTATAGTCACGAGGAACTGGCGAAAGCTATGGGAAAATCCAGACCCT
ATATCAGTAACGCTCTCAGACTCCTCCAACTTCCCCAAGAGATACAGACGAGTATCGAAAATGGCAAACTGAGTCAAGGA
CATGCTAGAGCACTTTTAGCTGTTGAGGATACAAAAAAGCAATTAACTATCTATCATCAGGTCCTTACTGAAAAATGGTC
TGTTCGTACCCTGGAGAAAAGAATTCAAGGACTTCCTAAAAAACAAAAATCAAAAAAAGATATTCATATAAAAGATAAAG
AAAAAGAACTTGAAAAATCACTTGGTCTCCCCGTTACTCTTCGTTATCACAAAAATCACTCTGGAACTATTCAGATCCAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.647

100

0.576


Multiple sequence alignment