Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NST80_RS09890 Genome accession   NZ_CP152039
Coordinates   2114932..2115642 (+) Length   236 a.a.
NCBI ID   WP_183138285.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2109932..2120642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS09880 (NST80_09880) treC 2111139..2112764 (-) 1626 Protein_1891 alpha,alpha-phosphotrehalase -
  NST80_RS09885 (NST80_09885) treP 2112825..2114745 (-) 1921 Protein_1892 PTS system trehalose-specific EIIBC component -
  NST80_RS09890 (NST80_09890) treR 2114932..2115642 (+) 711 WP_183138285.1 trehalose operon repressor Regulator
  NST80_RS09895 (NST80_09895) - 2115696..2116256 (-) 561 WP_021144703.1 TIGR01440 family protein -
  NST80_RS09900 (NST80_09900) - 2116272..2116610 (-) 339 WP_183138286.1 hypothetical protein -
  NST80_RS09905 (NST80_09905) - 2116643..2116999 (-) 357 WP_002885732.1 hypothetical protein -
  NST80_RS09910 (NST80_09910) - 2117290..2118171 (-) 882 WP_064520875.1 class II fructose-bisphosphate aldolase -
  NST80_RS09920 (NST80_09920) - 2118595..2119890 (-) 1296 WP_183138287.1 gamma-glutamylcysteine synthetase -
  NST80_RS09925 (NST80_09925) rplQ 2120140..2120526 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27341.92 Da        Isoelectric Point: 6.6088

>NTDB_id=986353 NST80_RS09890 WP_183138285.1 2114932..2115642(+) (treR) [Streptococcus sp. FSL K6-1323]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSNLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQINLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=986353 NST80_RS09890 WP_183138285.1 2114932..2115642(+) (treR) [Streptococcus sp. FSL K6-1323]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTAGAGATACTATACGAAAGGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGTTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATCGAGCAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAATCTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTTTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGATCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60

99.576

0.597

Multiple sequence alignment