Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHH37_RS20560 Genome accession   NZ_CP152038
Coordinates   4049709..4051082 (-) Length   457 a.a.
NCBI ID   WP_008407021.1    Uniprot ID   -
Organism   Solibacillus sp. FSL K6-1781     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4044709..4056082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH37_RS20540 (MHH37_20540) ispF 4046335..4046811 (-) 477 WP_008407014.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MHH37_RS20545 (MHH37_20545) ispD 4046933..4047613 (-) 681 WP_342574454.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHH37_RS20550 (MHH37_20550) - 4047627..4048706 (-) 1080 WP_008407019.1 PIN/TRAM domain-containing protein -
  MHH37_RS20555 (MHH37_20555) - 4048992..4049639 (+) 648 WP_008407020.1 GPR1/FUN34/YaaH family transporter -
  MHH37_RS20560 (MHH37_20560) radA 4049709..4051082 (-) 1374 WP_008407021.1 DNA repair protein RadA Machinery gene
  MHH37_RS20565 (MHH37_20565) - 4051323..4053767 (-) 2445 WP_014822400.1 ATP-dependent Clp protease ATP-binding subunit -
  MHH37_RS20570 (MHH37_20570) - 4053764..4054861 (-) 1098 WP_014822399.1 protein arginine kinase -
  MHH37_RS20575 (MHH37_20575) - 4054858..4055400 (-) 543 WP_008407026.1 UvrB/UvrC motif-containing protein -
  MHH37_RS20580 (MHH37_20580) - 4055413..4055877 (-) 465 WP_008407027.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50400.94 Da        Isoelectric Point: 7.0489

>NTDB_id=986282 MHH37_RS20560 WP_008407021.1 4049709..4051082(-) (radA) [Solibacillus sp. FSL K6-1781]
MAKKKSKFMCSSCGYEAAKWMGRCPGCGEWNTMNEEVEVISKGPRGAFQHSTTATKATPIIHVEVQEETRIATEMNEFNR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNQGKRVLYISGEESVRQTKLRAERLGVHTPELYIYSETNLEFLNQT
IDEVQPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFEG
ERHHNHRILRSQKNRFGSTNEIAIFEMLHGGLKEVLNPSELFLQERSQGAPGSTIVASMEGTRPILVEIQSLVTPTSFNY
PKRMATGVDQNRVQLLMAVLEKRMGMMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQTVRPTDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRAFIPASNIGGWEFPPDIQVVGVETISDALRESFQNL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=986282 MHH37_RS20560 WP_008407021.1 4049709..4051082(-) (radA) [Solibacillus sp. FSL K6-1781]
ATGGCAAAAAAGAAGTCTAAATTTATGTGCAGCAGCTGTGGCTATGAAGCAGCAAAATGGATGGGGCGCTGTCCTGGCTG
TGGCGAATGGAATACGATGAATGAAGAAGTCGAAGTCATCTCAAAAGGGCCACGCGGGGCGTTCCAGCATTCTACAACGG
CTACAAAAGCAACCCCTATTATTCATGTGGAAGTACAAGAAGAAACACGTATCGCTACAGAGATGAATGAATTTAATCGT
GTACTCGGAGGCGGTATTGTACCAGGTTCACTCGTGCTGATAGGCGGTGATCCGGGTATCGGGAAATCGACATTACTACT
GCAAGTATCTGCACTTCTTTCTAATCAGGGAAAACGTGTTTTATATATATCCGGTGAAGAATCTGTACGTCAGACGAAGC
TGCGTGCTGAACGTTTAGGTGTACATACACCGGAGCTTTATATTTACTCGGAAACAAATCTGGAATTTTTAAATCAAACA
ATCGATGAAGTCCAACCGAAATTTGTCATTGTCGATTCGATTCAAACGGTGCACCATCCGGAAGTTACTAGTGCGCCGGG
CAGTGTGTCACAAGTACGTGAATGTACAGCAGAATTAATGCGTATTGCAAAAACAAAAAATATCGCTATTTTTCTTGTTG
GTCACGTTACAAAAGAAGGACAGATTGCCGGTCCGCGTATTTTAGAACATATGGTAGATACGGTGCTTTACTTTGAAGGG
GAACGTCACCATAACCACCGGATTTTACGCAGTCAGAAAAACCGTTTTGGTTCTACAAATGAAATTGCAATTTTTGAAAT
GCTCCATGGGGGATTAAAGGAAGTATTGAATCCGTCCGAGCTGTTCTTACAGGAACGTTCACAAGGTGCCCCTGGTTCAA
CAATTGTTGCATCGATGGAAGGGACACGCCCAATTTTGGTAGAAATACAGTCGCTTGTTACACCAACCAGTTTCAATTAT
CCGAAGCGTATGGCAACCGGGGTTGACCAAAACCGTGTTCAGCTTTTAATGGCGGTATTGGAAAAACGTATGGGCATGAT
GCTTCAGGCACAGGATGCGTATATAAAAGTTGCGGGTGGGGTGAAACTGGATGAGCCTGCGATTGATTTAGCTGTCTTAA
CAAGTATTGTATCAAGCTTTAAAGATCAGACAGTACGTCCGACAGATTGTTTTATCGGTGAAGTGGGTTTAACGGGTGAA
GTACGTCGTGTTTCCAGAATTGAGCAACGTGTACAGGAGGCGGCAAAGTTAGGGTTTAAACGCGCCTTTATTCCAGCTTC
TAATATTGGGGGCTGGGAATTCCCGCCGGACATACAAGTCGTCGGTGTCGAAACAATCAGTGATGCACTGCGGGAATCTT
TTCAAAATTTATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.524

100

0.707
  radA Streptococcus pneumoniae Rx1

63.02

100

0.63
  radA Streptococcus pneumoniae D39

63.02

100

0.63
  radA Streptococcus pneumoniae R6

63.02

100

0.63
  radA Streptococcus pneumoniae TIGR4

63.02

100

0.63
  radA Streptococcus mitis NCTC 12261

63.02

100

0.63
  radA Streptococcus mitis SK321

63.02

100

0.63

Multiple sequence alignment