Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYE62_RS11625 Genome accession   NZ_CP152037
Coordinates   2359162..2359770 (+) Length   202 a.a.
NCBI ID   WP_094031925.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2861     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2354162..2364770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS11585 (NYE62_11585) - 2355219..2355725 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  NYE62_RS11590 (NYE62_11590) - 2355863..2356276 (+) 414 WP_039254739.1 hypothetical protein -
  NYE62_RS11595 (NYE62_11595) - 2356306..2356737 (-) 432 WP_342496959.1 YppG family protein -
  NYE62_RS11600 (NYE62_11600) - 2356924..2357106 (+) 183 WP_003153532.1 YppF family protein -
  NYE62_RS11605 (NYE62_11605) - 2357145..2357513 (-) 369 WP_007409492.1 YppE family protein -
  NYE62_RS11610 (NYE62_11610) - 2357559..2357804 (-) 246 WP_007409491.1 DUF5446 family protein -
  NYE62_RS11615 (NYE62_11615) sspM 2358010..2358114 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  NYE62_RS11620 (NYE62_11620) - 2358158..2359120 (-) 963 WP_342496960.1 DUF2515 domain-containing protein -
  NYE62_RS11625 (NYE62_11625) recU 2359162..2359770 (+) 609 WP_094031925.1 Holliday junction resolvase RecU Machinery gene
  NYE62_RS11630 (NYE62_11630) - 2359809..2362592 (+) 2784 WP_251257376.1 PBP1A family penicillin-binding protein -
  NYE62_RS11635 (NYE62_11635) - 2362669..2363160 (-) 492 WP_144664610.1 YpoC family protein -
  NYE62_RS11640 (NYE62_11640) nth 2363157..2363816 (-) 660 WP_007612187.1 endonuclease III -
  NYE62_RS11645 (NYE62_11645) dnaD 2363835..2364533 (-) 699 WP_060674319.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.77 Da        Isoelectric Point: 9.5849

>NTDB_id=986210 NYE62_RS11625 WP_094031925.1 2359162..2359770(+) (recU) [Bacillus sp. FSL K6-2861]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRRDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=986210 NYE62_RS11625 WP_094031925.1 2359162..2359770(+) (recU) [Bacillus sp. FSL K6-2861]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment