Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NYE62_RS07220 Genome accession   NZ_CP152037
Coordinates   1412009..1412605 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2861     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407009..1417605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS07190 (NYE62_07190) - 1407222..1407677 (+) 456 WP_251257131.1 flavodoxin -
  NYE62_RS07195 (NYE62_07195) dapD 1407759..1408469 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NYE62_RS07200 (NYE62_07200) - 1408540..1409664 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  NYE62_RS07205 (NYE62_07205) - 1409725..1409970 (+) 246 WP_003154596.1 YkuS family protein -
  NYE62_RS07210 (NYE62_07210) - 1410004..1410810 (-) 807 WP_342497326.1 mechanosensitive ion channel family protein -
  NYE62_RS07215 (NYE62_07215) - 1411099..1411557 (+) 459 WP_144664192.1 TlpA disulfide reductase family protein -
  NYE62_RS07220 (NYE62_07220) rok 1412009..1412605 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  NYE62_RS07225 (NYE62_07225) - 1412626..1413618 (-) 993 WP_007409627.1 hypothetical protein -
  NYE62_RS07230 (NYE62_07230) - 1413764..1414366 (+) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  NYE62_RS07235 (NYE62_07235) - 1414418..1415437 (+) 1020 WP_039062999.1 molybdopterin-synthase adenylyltransferase MoeB -
  NYE62_RS07240 (NYE62_07240) glp 1415455..1416747 (+) 1293 WP_342497327.1 gephyrin-like molybdotransferase Glp -
  NYE62_RS07245 (NYE62_07245) mobB 1416708..1417229 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=986204 NYE62_RS07220 WP_012117447.1 1412009..1412605(+) (rok) [Bacillus sp. FSL K6-2861]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=986204 NYE62_RS07220 WP_012117447.1 1412009..1412605(+) (rok) [Bacillus sp. FSL K6-2861]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGAACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment