Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYE62_RS01820 Genome accession   NZ_CP152037
Coordinates   370606..371043 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2861     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 365606..376043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS01795 (NYE62_01795) - 366626..367762 (+) 1137 WP_342497192.1 zinc-dependent alcohol dehydrogenase -
  NYE62_RS01800 (NYE62_01800) - 367777..368211 (+) 435 WP_012116767.1 RDD family protein -
  NYE62_RS01805 (NYE62_01805) - 368283..368606 (+) 324 WP_144664490.1 YckD family protein -
  NYE62_RS01810 (NYE62_01810) - 368710..370146 (+) 1437 WP_113766610.1 family 1 glycosylhydrolase -
  NYE62_RS01815 (NYE62_01815) nin/comJ 370187..370585 (-) 399 WP_015239128.1 competence protein ComJ Regulator
  NYE62_RS01820 (NYE62_01820) nucA/comI 370606..371043 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE62_RS01825 (NYE62_01825) hxlB 371401..371958 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  NYE62_RS01830 (NYE62_01830) hxlA 371955..372590 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  NYE62_RS01835 (NYE62_01835) - 372823..373185 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=986181 NYE62_RS01820 WP_003156588.1 370606..371043(-) (nucA/comI) [Bacillus sp. FSL K6-2861]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=986181 NYE62_RS01820 WP_003156588.1 370606..371043(-) (nucA/comI) [Bacillus sp. FSL K6-2861]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment