Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NYE42_RS13040 Genome accession   NZ_CP152036
Coordinates   2664775..2665542 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus sp. FSL K6-2865     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2659775..2670542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS13020 (NYE42_13000) - 2659977..2660789 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  NYE42_RS13025 (NYE42_13005) ccpN 2660815..2661453 (-) 639 WP_144663978.1 transcriptional regulator CcpN -
  NYE42_RS13030 (NYE42_13010) glyS 2661554..2663593 (-) 2040 WP_144663977.1 glycine--tRNA ligase subunit beta -
  NYE42_RS13035 (NYE42_13015) glyQ 2663586..2664473 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  NYE42_RS13040 (NYE42_13020) recO 2664775..2665542 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  NYE42_RS13045 (NYE42_13025) - 2665579..2665722 (-) 144 WP_007408286.1 YqzL family protein -
  NYE42_RS13050 (NYE42_13030) era 2665878..2666783 (-) 906 WP_007408285.1 GTPase Era -
  NYE42_RS13055 (NYE42_13035) - 2666764..2667174 (-) 411 WP_003152976.1 cytidine deaminase -
  NYE42_RS13060 (NYE42_13040) - 2667298..2667672 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  NYE42_RS13065 (NYE42_13045) ybeY 2667653..2668126 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  NYE42_RS13070 (NYE42_13050) - 2668127..2670259 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=986144 NYE42_RS13040 WP_007408287.1 2664775..2665542(-) (recO) [Bacillus sp. FSL K6-2865]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=986144 NYE42_RS13040 WP_007408287.1 2664775..2665542(-) (recO) [Bacillus sp. FSL K6-2865]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment