Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYE42_RS11470 Genome accession   NZ_CP152036
Coordinates   2334968..2335576 (+) Length   202 a.a.
NCBI ID   WP_007409489.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2329968..2340576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS11430 (NYE42_11410) - 2330988..2331494 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  NYE42_RS11435 (NYE42_11415) - 2331633..2332046 (+) 414 WP_039254739.1 hypothetical protein -
  NYE42_RS11440 (NYE42_11420) - 2332076..2332543 (-) 468 WP_094032290.1 YppG family protein -
  NYE42_RS11445 (NYE42_11425) - 2332730..2332912 (+) 183 WP_003153532.1 YppF family protein -
  NYE42_RS11450 (NYE42_11430) - 2332951..2333319 (-) 369 WP_007409492.1 YppE family protein -
  NYE42_RS11455 (NYE42_11435) - 2333365..2333610 (-) 246 WP_277506579.1 DUF5446 family protein -
  NYE42_RS11460 (NYE42_11440) sspM 2333816..2333920 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  NYE42_RS11465 (NYE42_11445) - 2333964..2334926 (-) 963 WP_108724853.1 DUF2515 domain-containing protein -
  NYE42_RS11470 (NYE42_11450) recU 2334968..2335576 (+) 609 WP_007409489.1 Holliday junction resolvase RecU Machinery gene
  NYE42_RS11475 (NYE42_11455) - 2335615..2338395 (+) 2781 WP_144464466.1 PBP1A family penicillin-binding protein -
  NYE42_RS11480 (NYE42_11460) - 2338473..2338964 (-) 492 WP_144464468.1 YpoC family protein -
  NYE42_RS11485 (NYE42_11465) nth 2338961..2339620 (-) 660 WP_047935888.1 endonuclease III -
  NYE42_RS11490 (NYE42_11470) dnaD 2339639..2340337 (-) 699 WP_060674319.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.81 Da        Isoelectric Point: 9.5778

>NTDB_id=986134 NYE42_RS11470 WP_007409489.1 2334968..2335576(+) (recU) [Bacillus sp. FSL K6-2865]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLVNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=986134 NYE42_RS11470 WP_007409489.1 2334968..2335576(+) (recU) [Bacillus sp. FSL K6-2865]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGTTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment