Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYE42_RS08165 Genome accession   NZ_CP152036
Coordinates   1639215..1640114 (+) Length   299 a.a.
NCBI ID   WP_352426890.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1634215..1645114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS08145 (NYE42_08135) - 1634902..1636608 (+) 1707 WP_144664700.1 glycosyl transferase -
  NYE42_RS08150 (NYE42_08140) - 1636605..1636886 (+) 282 WP_014417762.1 FlhB-like flagellar biosynthesis protein -
  NYE42_RS08155 (NYE42_08145) sucC 1637061..1638218 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  NYE42_RS08160 (NYE42_08150) sucD 1638247..1639149 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  NYE42_RS08165 (NYE42_08155) dprA 1639215..1640114 (+) 900 WP_352426890.1 DNA-processing protein DprA Machinery gene
  NYE42_RS08170 (NYE42_08160) topA 1640296..1642371 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  NYE42_RS08175 (NYE42_08165) trmFO 1642436..1643743 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE42_RS08180 (NYE42_08170) xerC 1643813..1644730 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32895.10 Da        Isoelectric Point: 7.8285

>NTDB_id=986129 NYE42_RS08165 WP_352426890.1 1639215..1640114(+) (dprA) [Bacillus sp. FSL K6-2865]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYMEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=986129 NYE42_RS08165 WP_352426890.1 1639215..1640114(+) (dprA) [Bacillus sp. FSL K6-2865]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGAGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATATGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment