Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NYE42_RS07315 Genome accession   NZ_CP152036
Coordinates   1425312..1425596 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420312..1430596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS07295 (NYE42_07285) - 1421555..1422463 (+) 909 WP_039063006.1 ketopantoate reductase family protein -
  NYE42_RS07300 (NYE42_07290) - 1422495..1423727 (-) 1233 WP_007409644.1 aminopeptidase -
  NYE42_RS07305 (NYE42_07295) - 1423828..1423962 (-) 135 WP_003154559.1 protein YkpC -
  NYE42_RS07310 (NYE42_07300) mreBH 1424034..1425041 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  NYE42_RS07315 (NYE42_07305) abrB 1425312..1425596 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NYE42_RS07320 (NYE42_07310) - 1425769..1427073 (+) 1305 WP_007409646.1 ATP-binding protein -
  NYE42_RS07325 (NYE42_07315) - 1427075..1427902 (+) 828 WP_352426858.1 gamma-glutamylcyclotransferase -
  NYE42_RS07330 (NYE42_07320) ktrC 1427943..1428608 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  NYE42_RS07335 (NYE42_07325) ade 1428757..1430490 (+) 1734 WP_352426859.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=986128 NYE42_RS07315 WP_003154557.1 1425312..1425596(+) (abrB) [Bacillus sp. FSL K6-2865]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=986128 NYE42_RS07315 WP_003154557.1 1425312..1425596(+) (abrB) [Bacillus sp. FSL K6-2865]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGAGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment