Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHB83_RS16450 Genome accession   NZ_CP152034
Coordinates   3234418..3235188 (-) Length   256 a.a.
NCBI ID   WP_251190305.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3149     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3229418..3240188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB83_RS16430 (MHB83_16430) - 3229511..3230332 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MHB83_RS16435 (MHB83_16435) - 3230358..3230996 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  MHB83_RS16440 (MHB83_16440) glyS 3231163..3233208 (-) 2046 WP_212045898.1 glycine--tRNA ligase subunit beta -
  MHB83_RS16445 (MHB83_16445) glyQ 3233201..3234088 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  MHB83_RS16450 (MHB83_16450) recO 3234418..3235188 (-) 771 WP_251190305.1 DNA repair protein RecO Machinery gene
  MHB83_RS16455 (MHB83_16455) - 3235224..3235367 (-) 144 WP_003217288.1 YqzL family protein -
  MHB83_RS16460 (MHB83_16460) era 3235516..3236421 (-) 906 WP_003217394.1 GTPase Era -
  MHB83_RS16465 (MHB83_16465) - 3236414..3236812 (-) 399 WP_003217296.1 cytidine deaminase -
  MHB83_RS16470 (MHB83_16470) - 3236926..3237312 (-) 387 WP_003217363.1 diacylglycerol kinase family protein -
  MHB83_RS16475 (MHB83_16475) ybeY 3237290..3237769 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  MHB83_RS16480 (MHB83_16480) - 3237770..3239857 (-) 2088 WP_050943969.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29248.93 Da        Isoelectric Point: 8.4348

>NTDB_id=986027 MHB83_RS16450 WP_251190305.1 3234418..3235188(-) (recO) [Bacillus sp. FSL K6-3149]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADVILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKMPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=986027 MHB83_RS16450 WP_251190305.1 3234418..3235188(-) (recO) [Bacillus sp. FSL K6-3149]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAAGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGCACAGATGCTGATGTTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAAATGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.172

100

0.762

Multiple sequence alignment