Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MHB83_RS13600 Genome accession   NZ_CP152034
Coordinates   2698528..2698908 (+) Length   126 a.a.
NCBI ID   WP_223251181.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3149     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2693528..2703908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB83_RS13590 (MHB83_13590) - 2694017..2697160 (+) 3144 WP_212046466.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  MHB83_RS13595 (MHB83_13595) - 2697357..2698265 (+) 909 WP_003212025.1 trypsin-like serine protease -
  MHB83_RS13600 (MHB83_13600) nucA/comI 2698528..2698908 (+) 381 WP_223251181.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MHB83_RS13605 (MHB83_13605) - 2699057..2699905 (+) 849 WP_342496400.1 STAS domain-containing protein -
  MHB83_RS13610 (MHB83_13610) - 2699938..2700480 (-) 543 WP_003211360.1 IseA DL-endopeptidase inhibitor family protein -
  MHB83_RS13615 (MHB83_13615) - 2700775..2701209 (+) 435 WP_003212431.1 hypothetical protein -
  MHB83_RS13620 (MHB83_13620) lexA 2701255..2701875 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  MHB83_RS13625 (MHB83_13625) yneA 2702035..2702346 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  MHB83_RS13630 (MHB83_13630) - 2702364..2703011 (+) 648 WP_003211322.1 recombinase family protein -
  MHB83_RS13635 (MHB83_13635) - 2703081..2703311 (+) 231 WP_003211509.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13785.42 Da        Isoelectric Point: 7.3831

>NTDB_id=986020 MHB83_RS13600 WP_223251181.1 2698528..2698908(+) (nucA/comI) [Bacillus sp. FSL K6-3149]
MGTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=986020 MHB83_RS13600 WP_223251181.1 2698528..2698908(+) (nucA/comI) [Bacillus sp. FSL K6-3149]
ATGGGCACGCTGTTAGGTGGATTTGGGGAGGAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGCATTCCGACTAAGCCTGGATTCGACCGAGATGAGTGGCCG
ATGGCAGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCGTCTGATAATAGGGGAGCGGGCTCATG
GGTCGGACACCAGATGAGCGGGTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment