Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MHB83_RS04905 Genome accession   NZ_CP152034
Coordinates   956475..957587 (+) Length   370 a.a.
NCBI ID   WP_003215341.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3149     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951475..962587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB83_RS04880 (MHB83_04880) rnpA 952228..952587 (-) 360 WP_003214983.1 ribonuclease P protein component -
  MHB83_RS04885 (MHB83_04885) rpmH 952666..952800 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  MHB83_RS04890 (MHB83_04890) dnaA 953420..954760 (+) 1341 WP_003214781.1 chromosomal replication initiator protein DnaA -
  MHB83_RS04895 (MHB83_04895) dnaN 954957..956093 (+) 1137 WP_106033057.1 DNA polymerase III subunit beta -
  MHB83_RS04900 (MHB83_04900) yaaA 956243..956458 (+) 216 WP_003215257.1 S4 domain-containing protein YaaA -
  MHB83_RS04905 (MHB83_04905) recF 956475..957587 (+) 1113 WP_003215341.1 DNA replication/repair protein RecF Machinery gene
  MHB83_RS04910 (MHB83_04910) - 957605..957850 (+) 246 WP_003214686.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  MHB83_RS04915 (MHB83_04915) gyrB 957908..959824 (+) 1917 WP_284907719.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MHB83_RS04920 (MHB83_04920) gyrA 960057..962558 (+) 2502 WP_003214767.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42581.69 Da        Isoelectric Point: 7.7384

>NTDB_id=985991 MHB83_RS04905 WP_003215341.1 956475..957587(+) (recF) [Bacillus sp. FSL K6-3149]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQKDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=985991 MHB83_RS04905 WP_003215341.1 956475..957587(+) (recF) [Bacillus sp. FSL K6-3149]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TTCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAAAGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAGAAATGGGCGCAGCCGTTGCATTTTGGCA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCACACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGCTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACTTGATACACGAAGAGATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835

Multiple sequence alignment