Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MHH61_RS14090 Genome accession   NZ_CP152033
Coordinates   2745785..2746363 (+) Length   192 a.a.
NCBI ID   WP_125587308.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3154     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2747258..2747563 2745785..2746363 flank 895


Gene organization within MGE regions


Location: 2745785..2747563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH61_RS14090 (MHH61_14075) comK 2745785..2746363 (+) 579 WP_125587308.1 competence protein ComK Regulator
  MHH61_RS14095 (MHH61_14080) - 2746663..2747145 (+) 483 WP_024425482.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22292.33 Da        Isoelectric Point: 8.7962

>NTDB_id=985955 MHH61_RS14090 WP_125587308.1 2745785..2746363(+) (comK) [Bacillus sp. FSL K6-3154]
MSGISETPLDSYVINQATMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNKY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=985955 MHH61_RS14090 WP_125587308.1 2745785..2746363(+) (comK) [Bacillus sp. FSL K6-3154]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAGCAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGC
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAAATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62

Multiple sequence alignment