Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHH61_RS09445 Genome accession   NZ_CP152033
Coordinates   1813778..1815157 (+) Length   459 a.a.
NCBI ID   WP_125587481.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808778..1820157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH61_RS09425 (MHH61_09420) - 1809120..1809584 (+) 465 WP_003217184.1 CtsR family transcriptional regulator -
  MHH61_RS09430 (MHH61_09425) - 1809599..1810156 (+) 558 WP_024425862.1 UvrB/UvrC motif-containing protein -
  MHH61_RS09435 (MHH61_09430) - 1810161..1811252 (+) 1092 WP_024425579.1 protein arginine kinase -
  MHH61_RS09440 (MHH61_09435) clpC 1811249..1813684 (+) 2436 WP_048240170.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  MHH61_RS09445 (MHH61_09440) radA 1813778..1815157 (+) 1380 WP_125587481.1 DNA repair protein RadA Machinery gene
  MHH61_RS09450 (MHH61_09445) disA 1815160..1816239 (+) 1080 WP_024425581.1 DNA integrity scanning diadenylate cyclase DisA -
  MHH61_RS09455 (MHH61_09450) - 1816393..1817493 (+) 1101 WP_024425582.1 PIN/TRAM domain-containing protein -
  MHH61_RS09460 (MHH61_09455) ispD 1817507..1818196 (+) 690 WP_024425583.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHH61_RS09465 (MHH61_09460) ispF 1818200..1818676 (+) 477 WP_003216928.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50065.55 Da        Isoelectric Point: 7.3483

>NTDB_id=985948 MHH61_RS09445 WP_125587481.1 1813778..1815157(+) (radA) [Bacillus sp. FSL K6-3154]
MAKTKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDKNQNVLYISGEESIKQTKLRADRLGIESTSLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPYQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=985948 MHH61_RS09445 WP_125587481.1 1813778..1815157(+) (radA) [Bacillus sp. FSL K6-3154]
ATGGCTAAGACAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCAGGCTG
CGGCACGTGGAACAGTATGACAGAAGAGGTCGTTCGCAAAGAGCCGGCAAACCGTCGAAGTGCTTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACAAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCTCTTGTTCTCATCGGCGGAGATCCTGGGATTGGGAAGTCCACATT
GTTATTACAAGTATCAGCACAGCTCTCAGACAAAAATCAGAATGTGTTATACATATCTGGTGAGGAGTCCATTAAACAAA
CGAAGCTAAGAGCGGACCGCCTTGGCATTGAAAGCACCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAGGAGATGAAACCTGCGTTTGTTGTGGTGGATTCGATTCAAACCGTTTATCAAAGCGATATAACGTCAGC
TCCCGGCTCTGTATCTCAAGTTAGAGAATGTACAGCGCAGCTGATGAAGATTGCCAAAACAAATGGTATTCCTATTTTTA
TCGTTGGTCACGTGACCAAAGAAGGCTCGATCGCAGGTCCACGCCTTTTAGAGCATATGGTGGACACAGTTCTTTATTTT
GAAGGCGAGCGTCATCATACGTTTCGTATTTTACGGGCGGTCAAAAACCGATTTGGTTCAACGAATGAATTGGGAATTTT
TGAAATGAGAGAGGAAGGGCTCACGGAAGTATTAAACCCATCAGAAATCTTTTTAGAAGAGCGGTCGGCAGGTGTATCTG
GTTCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCCGTACTTGTCGAGATACAGGCGTTAATTTCCCCGACAAGCTTT
GGGAATCCGCGAAGAATGGCCACTGGCCTTGACCATAATCGAGTATCGCTGCTCATGGCAGTTTTAGAAAAACGCGTGGG
GCTGCTGCTGCAAAACCAAGATGCCTATTTAAAGGTCGCAGGCGGTGTGAAGCTTGACGAACCGGCGATTGACTTAGCTA
TTGCCGTCAGTATTGCATCAAGCTTTAAAGATGCAGCGCCGTATCAAGCGGATTGCTTTATAGGAGAGGTCGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGAGTGCAGGAAGCTGCAAAACTAGGATTTAAGCGAATGTTTATTCC
TCAGGCGAATATAGACGGATGGAAAAAGCCGAGAGGGATTGAGTTAGTTGGTGTAGAAAATGTAGCGGAGGCACTTCGAA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

AAA domain (AAA_25)

(67-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

87.336

99.782

0.871
  radA Streptococcus mitis NCTC 12261

61.589

98.693

0.608
  radA Streptococcus pneumoniae Rx1

61.589

98.693

0.608
  radA Streptococcus pneumoniae D39

61.589

98.693

0.608
  radA Streptococcus pneumoniae R6

61.589

98.693

0.608
  radA Streptococcus pneumoniae TIGR4

61.589

98.693

0.608
  radA Streptococcus mitis SK321

61.589

98.693

0.608

Multiple sequence alignment