Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MHH61_RS08875 Genome accession   NZ_CP152033
Coordinates   1707357..1708469 (+) Length   370 a.a.
NCBI ID   WP_024424075.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702357..1713469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH61_RS08850 (MHH61_08845) rnpA 1703108..1703467 (-) 360 WP_024427652.1 ribonuclease P protein component -
  MHH61_RS08855 (MHH61_08850) rpmH 1703546..1703680 (-) 135 WP_073208224.1 50S ribosomal protein L34 -
  MHH61_RS08860 (MHH61_08855) dnaA 1704301..1705641 (+) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  MHH61_RS08865 (MHH61_08860) dnaN 1705838..1706974 (+) 1137 WP_024424074.1 DNA polymerase III subunit beta -
  MHH61_RS08870 (MHH61_08865) yaaA 1707125..1707340 (+) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  MHH61_RS08875 (MHH61_08870) recF 1707357..1708469 (+) 1113 WP_024424075.1 DNA replication/repair protein RecF Machinery gene
  MHH61_RS08880 (MHH61_08875) remB 1708487..1708732 (+) 246 WP_056766786.1 extracellular matrix regulator RemB -
  MHH61_RS08885 (MHH61_08880) gyrB 1708790..1710706 (+) 1917 WP_024424077.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MHH61_RS08890 (MHH61_08885) gyrA 1710939..1713443 (+) 2505 WP_024424078.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42573.66 Da        Isoelectric Point: 7.3663

>NTDB_id=985944 MHH61_RS08875 WP_024424075.1 1707357..1708469(+) (recF) [Bacillus sp. FSL K6-3154]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=985944 MHH61_RS08875 WP_024424075.1 1707357..1708469(+) (recF) [Bacillus sp. FSL K6-3154]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATTATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTTACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATCGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATTGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835

Multiple sequence alignment