Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHH61_RS01560 Genome accession   NZ_CP152033
Coordinates   272947..273717 (-) Length   256 a.a.
NCBI ID   WP_101676866.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3154     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 267947..278717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH61_RS01540 (MHH61_01540) - 268039..268860 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MHH61_RS01545 (MHH61_01545) - 268886..269524 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  MHH61_RS01550 (MHH61_01550) glyS 269692..271737 (-) 2046 WP_024423018.1 glycine--tRNA ligase subunit beta -
  MHH61_RS01555 (MHH61_01555) glyQ 271730..272617 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  MHH61_RS01560 (MHH61_01560) recO 272947..273717 (-) 771 WP_101676866.1 DNA repair protein RecO Machinery gene
  MHH61_RS01565 (MHH61_01565) - 273753..273896 (-) 144 WP_003217288.1 YqzL family protein -
  MHH61_RS01570 (MHH61_01570) era 274045..274950 (-) 906 WP_007501305.1 GTPase Era -
  MHH61_RS01575 (MHH61_01575) - 274943..275341 (-) 399 WP_008356263.1 cytidine deaminase -
  MHH61_RS01580 (MHH61_01580) - 275455..275841 (-) 387 WP_024423020.1 diacylglycerol kinase family protein -
  MHH61_RS01585 (MHH61_01585) ybeY 275819..276298 (-) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  MHH61_RS01590 (MHH61_01590) - 276299..278413 (-) 2115 WP_164512169.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29297.92 Da        Isoelectric Point: 8.1204

>NTDB_id=985920 MHH61_RS01560 WP_101676866.1 272947..273717(-) (recO) [Bacillus sp. FSL K6-3154]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELMDKGTEEKKSNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=985920 MHH61_RS01560 WP_101676866.1 272947..273717(-) (recO) [Bacillus sp. FSL K6-3154]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGTGTGATGGCCAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTCACCGCATATGCCGCATATATGACGGAATTGATGGATAAAGGGACAGAAGAAAAAAAGTC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75

100

0.75

Multiple sequence alignment