Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACN3CX_RS12440 Genome accession   NZ_CP184461
Coordinates   2789366..2790049 (+) Length   227 a.a.
NCBI ID   WP_010948191.1    Uniprot ID   Q5ZSM8
Organism   Legionella pneumophila subsp. pneumophila strain Lp02 dksA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2784366..2795049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3CX_RS12425 (ACN3CX_12425) - 2786219..2787607 (-) 1389 WP_010948188.1 phosphomannomutase/phosphoglucomutase -
  ACN3CX_RS12430 (ACN3CX_12430) dut 2787608..2788066 (-) 459 WP_014842515.1 dUTP diphosphatase -
  ACN3CX_RS12435 (ACN3CX_12435) coaBC 2788093..2789289 (-) 1197 WP_015444059.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ACN3CX_RS12440 (ACN3CX_12440) radC 2789366..2790049 (+) 684 WP_010948191.1 RadC family protein Machinery gene
  ACN3CX_RS12445 (ACN3CX_12445) - 2790085..2790321 (+) 237 WP_015444058.1 hypothetical protein -
  ACN3CX_RS12450 (ACN3CX_12450) lepB 2790401..2794285 (+) 3885 WP_010948192.1 Dot/Icm T4SS GTPase-activating effector LepB -
  ACN3CX_RS12455 (ACN3CX_12455) thpR 2794408..2794971 (-) 564 WP_010948193.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25749.42 Da        Isoelectric Point: 7.0185

>NTDB_id=985919 ACN3CX_RS12440 WP_010948191.1 2789366..2790049(+) (radC) [Legionella pneumophila subsp. pneumophila strain Lp02 dksA1]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=985919 ACN3CX_RS12440 WP_010948191.1 2789366..2790049(+) (radC) [Legionella pneumophila subsp. pneumophila strain Lp02 dksA1]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTACATAGCCTCTCTGATAT
TGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAGGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGAAGTGATTTTATTCATCTGCAAAAAGAAATCCGGTTATCTAACACACA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATTATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACGGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGATTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZSM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.119

96.035

0.414

Multiple sequence alignment