Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MHI60_RS07355 Genome accession   NZ_CP152032
Coordinates   1448003..1449115 (-) Length   370 a.a.
NCBI ID   WP_061406450.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1443003..1454115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI60_RS07340 (MHI60_07340) gyrA 1443029..1445533 (-) 2505 WP_144484291.1 DNA gyrase subunit A -
  MHI60_RS07345 (MHI60_07345) gyrB 1445766..1447682 (-) 1917 WP_111292035.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MHI60_RS07350 (MHI60_07350) - 1447740..1447985 (-) 246 WP_056766786.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  MHI60_RS07355 (MHI60_07355) recF 1448003..1449115 (-) 1113 WP_061406450.1 DNA replication/repair protein RecF Machinery gene
  MHI60_RS07360 (MHI60_07360) yaaA 1449132..1449347 (-) 216 WP_048238335.1 S4 domain-containing protein YaaA -
  MHI60_RS07365 (MHI60_07365) dnaN 1449498..1450634 (-) 1137 WP_048238334.1 DNA polymerase III subunit beta -
  MHI60_RS07370 (MHI60_07370) dnaA 1450831..1452171 (-) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  MHI60_RS07375 (MHI60_07375) rpmH 1452792..1452926 (+) 135 WP_073208224.1 50S ribosomal protein L34 -
  MHI60_RS07380 (MHI60_07380) rnpA 1453005..1453364 (+) 360 WP_008360906.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42545.61 Da        Isoelectric Point: 7.3662

>NTDB_id=985880 MHI60_RS07355 WP_061406450.1 1448003..1449115(-) (recF) [Bacillus sp. FSL K6-3200]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=985880 MHI60_RS07355 WP_061406450.1 1448003..1449115(-) (recF) [Bacillus sp. FSL K6-3200]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAATTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAAGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCACAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACAGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTTGAAAAATGGGCCCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAAGGTCGTGTACAGACCTTCGTCACTACAACAAGTGT
TGAAGGCATTGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835

Multiple sequence alignment