Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MHB39_RS20945 Genome accession   NZ_CP152031
Coordinates   4228311..4229261 (-) Length   316 a.a.
NCBI ID   WP_016995399.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL K6-4013     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4223311..4234261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB39_RS20920 (MHB39_20920) - 4224008..4224553 (+) 546 WP_016992693.1 hypothetical protein -
  MHB39_RS20925 (MHB39_20925) - 4225207..4225521 (-) 315 WP_016995403.1 antibiotic biosynthesis monooxygenase -
  MHB39_RS20930 (MHB39_20930) - 4225523..4226542 (-) 1020 WP_036079440.1 siderophore ABC transporter substrate-binding protein -
  MHB39_RS20935 (MHB39_20935) - 4226607..4227368 (-) 762 WP_016995401.1 ABC transporter ATP-binding protein -
  MHB39_RS20940 (MHB39_20940) - 4227365..4228318 (-) 954 WP_342545225.1 iron chelate uptake ABC transporter family permease subunit -
  MHB39_RS20945 (MHB39_20945) ceuB 4228311..4229261 (-) 951 WP_016995399.1 ABC transporter permease Machinery gene
  MHB39_RS20950 (MHB39_20950) - 4229547..4230599 (-) 1053 WP_258860746.1 hypothetical protein -
  MHB39_RS20955 (MHB39_20955) menC 4230651..4231757 (-) 1107 WP_342545228.1 o-succinylbenzoate synthase -
  MHB39_RS20960 (MHB39_20960) - 4231779..4232603 (-) 825 WP_036079445.1 GNAT family N-acetyltransferase -
  MHB39_RS20965 (MHB39_20965) - 4232603..4233748 (-) 1146 WP_016995394.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34840.05 Da        Isoelectric Point: 10.1980

>NTDB_id=985851 MHB39_RS20945 WP_016995399.1 4228311..4229261(-) (ceuB) [Lysinibacillus sp. FSL K6-4013]
MKIRYLLTATVLLSIVSLFIGVVDIKPSDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=985851 MHB39_RS20945 WP_016995399.1 4228311..4229261(-) (ceuB) [Lysinibacillus sp. FSL K6-4013]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTTTGCTGTCTATTGTGTCGCTATTTATCGGAGTAGTTGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAACTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCCATCTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTATCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTGGGTGTATTGATTTCAATGATGTTCTTTACGAATGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATATTGTCCTCTGTTACAACATTCTTTGCGTATAAGGCGAATATTATC
CAGAACATTTCCGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTACGAACTGTTATACGTAAGTGTACC
AATACTCATTTTGGCTTACATTTACGCAAATCGTTTTACAGTGGCTGGGATGGGAGAGGATTTTGCAAAAAATCTTGGTC
TATCCTATAAATTTGTAGTCAATTTAGGCTTAGTGTTGGTAGCTCTTATCTCCACGACAGTGGTGTTAACAGTCGGTATC
ATTCCGTTCCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTTAAAGGTGATAATTTGGCGAAAACCTTGCCGCATAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGTGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528

Multiple sequence alignment