Detailed information NTG0985804

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACLB1J_RS05470
• Genome accession: NZ_CP184262
• Coordinates: 1118436..1119428 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain H32
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1113436..1124428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLB1J_RS05440 (ACLB1J_05440)	ispD	1113497..1114207 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACLB1J_RS05445 (ACLB1J_05445)	ispF	1114207..1114686 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACLB1J_RS05450 (ACLB1J_05450)	truD	1114683..1115732 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACLB1J_RS05455 (ACLB1J_05455)	surE	1115713..1116474 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACLB1J_RS05460 (ACLB1J_05460)	pcm	1116468..1117094 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACLB1J_RS05465 (ACLB1J_05465)	nlpD	1117279..1118373 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACLB1J_RS05470 (ACLB1J_05470)	rpoS	1118436..1119428 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACLB1J_RS05475 (ACLB1J_05475)	ygbN	1119522..1120886 (-)	1365	WP_000104441.1	GntP family transporter	-
ACLB1J_RS05480 (ACLB1J_05480)	ygbM	1120975..1121751 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACLB1J_RS05485 (ACLB1J_05485)	ygbL	1121756..1122394 (-)	639	WP_001278994.1	aldolase	-
ACLB1J_RS05490 (ACLB1J_05490)	otnK	1122391..1123653 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=985804 ACLB1J_RS05470 WP_000081550.1 1118436..1119428(+) (rpoS) [Escherichia coli strain H32]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=985804 ACLB1J_RS05470 WP_000081550.1 1118436..1119428(+) (rpoS) [Escherichia coli strain H32]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715