Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHH54_RS11645 Genome accession   NZ_CP152030
Coordinates   2313396..2314166 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-4563     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2308396..2319166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH54_RS11625 (MHH54_11625) - 2308489..2309310 (-) 822 WP_003217375.1 pyruvate, water dikinase regulatory protein -
  MHH54_RS11630 (MHH54_11630) - 2309336..2309974 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  MHH54_RS11635 (MHH54_11635) glyS 2310141..2312186 (-) 2046 WP_342500265.1 glycine--tRNA ligase subunit beta -
  MHH54_RS11640 (MHH54_11640) glyQ 2312179..2313066 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  MHH54_RS11645 (MHH54_11645) recO 2313396..2314166 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  MHH54_RS11650 (MHH54_11650) - 2314202..2314345 (-) 144 WP_003217288.1 YqzL family protein -
  MHH54_RS11655 (MHH54_11655) era 2314494..2315399 (-) 906 WP_003217394.1 GTPase Era -
  MHH54_RS11660 (MHH54_11660) - 2315392..2315790 (-) 399 WP_003217296.1 cytidine deaminase -
  MHH54_RS11665 (MHH54_11665) - 2315904..2316290 (-) 387 WP_003217363.1 diacylglycerol kinase family protein -
  MHH54_RS11670 (MHH54_11670) ybeY 2316268..2316747 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  MHH54_RS11675 (MHH54_11675) - 2316748..2318835 (-) 2088 WP_189286497.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=985798 MHH54_RS11645 WP_034661344.1 2313396..2314166(-) (recO) [Bacillus sp. FSL K6-4563]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=985798 MHH54_RS11645 WP_034661344.1 2313396..2314166(-) (recO) [Bacillus sp. FSL K6-4563]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAGGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGTGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment