Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MHH54_RS08740 Genome accession   NZ_CP152030
Coordinates   1765147..1765527 (+) Length   126 a.a.
NCBI ID   WP_223251255.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-4563     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1760147..1770527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH54_RS08730 (MHH54_08730) - 1760441..1763584 (+) 3144 WP_342500872.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  MHH54_RS08735 (MHH54_08735) - 1763977..1764885 (+) 909 WP_106032497.1 trypsin-like serine protease -
  MHH54_RS08740 (MHH54_08740) nucA/comI 1765147..1765527 (+) 381 WP_223251255.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MHH54_RS08745 (MHH54_08745) - 1765676..1766524 (+) 849 WP_342500873.1 STAS domain-containing protein -
  MHH54_RS08750 (MHH54_08750) - 1766557..1767099 (-) 543 WP_003211360.1 IseA DL-endopeptidase inhibitor family protein -
  MHH54_RS08755 (MHH54_08755) - 1767394..1767828 (+) 435 WP_044141410.1 hypothetical protein -
  MHH54_RS08760 (MHH54_08760) lexA 1767875..1768495 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  MHH54_RS08765 (MHH54_08765) yneA 1768655..1768966 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  MHH54_RS08770 (MHH54_08770) - 1768984..1769631 (+) 648 WP_268493779.1 recombinase family protein -
  MHH54_RS08775 (MHH54_08775) - 1769701..1769931 (+) 231 WP_003211509.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13751.39 Da        Isoelectric Point: 7.3841

>NTDB_id=985791 MHH54_RS08740 WP_223251255.1 1765147..1765527(+) (nucA/comI) [Bacillus sp. FSL K6-4563]
MGTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=985791 MHH54_RS08740 WP_223251255.1 1765147..1765527(+) (nucA/comI) [Bacillus sp. FSL K6-4563]
ATGGGCACGCTATTAGGTGGATTTGGGGAGGAACATGCGGCAAAAGGTGCCGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGCATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGTGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATCAGCGGATTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.143

94.444

0.54

Multiple sequence alignment