Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MHH54_RS07870 Genome accession   NZ_CP152030
Coordinates   1582490..1583392 (+) Length   300 a.a.
NCBI ID   WP_342500843.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-4563     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1577490..1588392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH54_RS07850 (MHH54_07850) - 1578156..1579892 (+) 1737 WP_003212009.1 hypothetical protein -
  MHH54_RS07855 (MHH54_07855) - 1579889..1580164 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  MHH54_RS07860 (MHH54_07860) sucC 1580341..1581501 (+) 1161 WP_003211841.1 ADP-forming succinate--CoA ligase subunit beta -
  MHH54_RS07865 (MHH54_07865) sucD 1581524..1582426 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  MHH54_RS07870 (MHH54_07870) dprA 1582490..1583392 (+) 903 WP_342500843.1 DNA-processing protein DprA Machinery gene
  MHH54_RS07875 (MHH54_07875) topA 1583586..1585661 (+) 2076 WP_003212237.1 type I DNA topoisomerase -
  MHH54_RS07880 (MHH54_07880) trmFO 1585732..1587036 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHH54_RS07885 (MHH54_07885) xerC 1587099..1588016 (+) 918 WP_003211704.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34110.43 Da        Isoelectric Point: 8.5961

>NTDB_id=985787 MHH54_RS07870 WP_342500843.1 1582490..1583392(+) (dprA) [Bacillus sp. FSL K6-4563]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGDLVKEEWTIVSGLAKGLDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=985787 MHH54_RS07870 WP_342500843.1 1582490..1583392(+) (dprA) [Bacillus sp. FSL K6-4563]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGATCTTGTAAAGGAAGAGTGGACGATTGTCAGTGGCTTAGCAAAAGGCCTTGATGGACTTGCACAT
AAAGAGTGCATTAGGAATAAAGGGAAAACGATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAAGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTACGTCAAACCAGAAAAGTGGCATT
TCCCCATGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Lactococcus lactis subsp. cremoris KW2

38.542

96

0.37

Multiple sequence alignment