Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MHH54_RS01985 Genome accession   NZ_CP152030
Coordinates   364485..364913 (-) Length   142 a.a.
NCBI ID   WP_003214307.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-4563     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 359485..369913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH54_RS01955 (MHH54_01955) - 359641..359970 (+) 330 WP_050943461.1 YckD family protein -
  MHH54_RS01960 (MHH54_01960) - 360020..360784 (-) 765 WP_003213935.1 MBL fold metallo-hydrolase -
  MHH54_RS01965 (MHH54_01965) - 360900..361316 (+) 417 WP_003214483.1 winged helix-turn-helix transcriptional regulator -
  MHH54_RS01970 (MHH54_01970) - 361346..362152 (+) 807 WP_003214338.1 AAC(3) family N-acetyltransferase -
  MHH54_RS01975 (MHH54_01975) - 362154..362540 (-) 387 WP_003213827.1 competence protein ComJ -
  MHH54_RS01980 (MHH54_01980) - 362661..364358 (-) 1698 WP_003214067.1 methyl-accepting chemotaxis protein -
  MHH54_RS01985 (MHH54_01985) nucA/comI 364485..364913 (-) 429 WP_003214307.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MHH54_RS01990 (MHH54_01990) - 365281..367350 (+) 2070 WP_003214320.1 hydantoinase/oxoprolinase family protein -
  MHH54_RS01995 (MHH54_01995) - 367340..369325 (+) 1986 WP_339161148.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15914.84 Da        Isoelectric Point: 5.5536

>NTDB_id=985767 MHH54_RS01985 WP_003214307.1 364485..364913(-) (nucA/comI) [Bacillus sp. FSL K6-4563]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSERYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=985767 MHH54_RS01985 WP_003214307.1 364485..364913(-) (nucA/comI) [Bacillus sp. FSL K6-4563]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAGACCATTCACTTCCCATCAGAACGTTACCCTGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGGCATTCATCCGTATGCACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAGTCCTTCAGATAATAGAGGAGCCGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment