Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   MHI39_RS20540 Genome accession   NZ_CP152029
Coordinates   4068614..4069408 (-) Length   264 a.a.
NCBI ID   WP_216386086.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 4063614..4074408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS20515 (MHI39_20515) - 4064082..4065530 (+) 1449 WP_342540085.1 glutamate synthase subunit beta -
  MHI39_RS20520 (MHI39_20520) mutY 4065542..4066633 (-) 1092 WP_342540086.1 A/G-specific adenine glycosylase -
  MHI39_RS20525 (MHI39_20525) - 4066953..4067936 (+) 984 WP_342540087.1 metal-dependent hydrolase -
  MHI39_RS20530 (MHI39_20530) - 4068052..4068216 (+) 165 WP_173720017.1 small, acid-soluble spore protein K -
  MHI39_RS20535 (MHI39_20535) - 4068272..4068595 (-) 324 WP_058005671.1 YfhH family protein -
  MHI39_RS20540 (MHI39_20540) recX 4068614..4069408 (-) 795 WP_216386086.1 recombination regulator RecX Regulator
  MHI39_RS20545 (MHI39_20545) - 4069632..4069760 (+) 129 WP_071977658.1 YfhE family protein -
  MHI39_RS20550 (MHI39_20550) - 4069839..4070024 (+) 186 WP_071977657.1 YfhD family protein -
  MHI39_RS20555 (MHI39_20555) - 4070448..4071710 (+) 1263 WP_280619085.1 helix-turn-helix transcriptional regulator -
  MHI39_RS20560 (MHI39_20560) - 4071724..4071885 (+) 162 WP_280619083.1 hypothetical protein -
  MHI39_RS20565 (MHI39_20565) trpA 4072032..4072829 (-) 798 WP_278892217.1 tryptophan synthase subunit alpha -
  MHI39_RS20570 (MHI39_20570) trpB 4072832..4074028 (-) 1197 WP_278892218.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31315.88 Da        Isoelectric Point: 7.4536

>NTDB_id=985752 MHI39_RS20540 WP_216386086.1 4068614..4069408(-) (recX) [Heyndrickxia sp. FSL K6-6286]
MPIITKISVQKNNVERYNIFLDGNYSFSVDEEVLARFQLMKGKELSELDITEINYEDEIRKGVNSAIHYLSFRMRSEREV
RDYLKQKEYPEPAIQEVIHKLYQLKYINDVEFAIAFVRTQVNTTKKGPSVLKRELKEKGISETNIDIAMKEYPMDAQLSH
ATALIEKTIKQNQKLSERSLKQKIEQNLLRKGFSGEMIQMAMNEVTIEKDEDQEWHAIIEQGMKAHRKFQKYSGYEYEQK
MKQTLYRKGFSIELIDRFINEYEK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=985752 MHI39_RS20540 WP_216386086.1 4068614..4069408(-) (recX) [Heyndrickxia sp. FSL K6-6286]
ATGCCAATTATTACGAAAATATCCGTACAAAAGAATAATGTTGAACGGTATAATATCTTTCTTGATGGGAACTACTCCTT
TAGTGTGGATGAAGAAGTATTAGCACGATTTCAGTTAATGAAGGGGAAGGAACTATCTGAATTAGATATTACTGAAATCA
ACTATGAGGATGAGATCCGTAAGGGTGTTAATAGTGCCATACATTATCTTTCCTTTCGCATGCGTTCTGAAAGGGAAGTT
AGGGATTATTTAAAGCAAAAAGAATATCCTGAACCTGCGATTCAAGAGGTTATCCATAAATTATATCAATTGAAATATAT
AAATGATGTAGAGTTTGCTATTGCCTTTGTTCGAACACAAGTCAATACAACGAAAAAAGGGCCAAGTGTTTTAAAACGGG
AGTTAAAGGAGAAAGGGATTTCTGAAACGAATATTGACATAGCGATGAAGGAATATCCAATGGATGCTCAGCTTTCCCAT
GCGACAGCACTGATTGAAAAAACAATCAAGCAGAACCAGAAGCTTTCCGAGAGAAGTTTAAAGCAAAAAATTGAACAGAA
TTTACTGAGAAAAGGTTTTTCGGGAGAAATGATCCAAATGGCCATGAATGAGGTAACGATCGAAAAGGATGAGGATCAGG
AATGGCATGCGATCATTGAGCAAGGAATGAAGGCCCATCGGAAATTCCAAAAGTATAGTGGCTATGAATATGAGCAAAAA
ATGAAACAGACCTTATATCGAAAAGGATTTTCAATCGAATTAATCGACCGATTTATCAATGAATATGAAAAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

50.19

99.621

0.5

Multiple sequence alignment