Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   MHI39_RS17730 Genome accession   NZ_CP152029
Coordinates   3525432..3526379 (-) Length   315 a.a.
NCBI ID   WP_342539861.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3520432..3531379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS17705 (MHI39_17705) - 3521217..3522008 (-) 792 WP_278890267.1 DUF2268 domain-containing putative Zn-dependent protease -
  MHI39_RS17710 (MHI39_17710) fabF 3522202..3523437 (-) 1236 WP_259546046.1 beta-ketoacyl-ACP synthase II -
  MHI39_RS17715 (MHI39_17715) - 3523577..3524515 (-) 939 WP_058004800.1 beta-ketoacyl-ACP synthase III -
  MHI39_RS17720 (MHI39_17720) - 3524778..3525095 (+) 318 WP_278890266.1 hypothetical protein -
  MHI39_RS17725 (MHI39_17725) comZ 3525222..3525404 (-) 183 WP_058004798.1 ComZ family protein Regulator
  MHI39_RS17730 (MHI39_17730) med 3525432..3526379 (-) 948 WP_342539861.1 BMP family ABC transporter substrate-binding protein Regulator
  MHI39_RS17735 (MHI39_17735) - 3526492..3527283 (-) 792 WP_278890264.1 hypothetical protein -
  MHI39_RS17740 (MHI39_17740) - 3527406..3528122 (-) 717 WP_278890263.1 alpha/beta fold hydrolase -
  MHI39_RS17745 (MHI39_17745) - 3528381..3528563 (+) 183 WP_058004794.1 YjzD family protein -
  MHI39_RS17750 (MHI39_17750) clpB 3528672..3531269 (-) 2598 WP_280618259.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35181.34 Da        Isoelectric Point: 7.4241

>NTDB_id=985744 MHI39_RS17730 WP_342539861.1 3525432..3526379(-) (med) [Heyndrickxia sp. FSL K6-6286]
MIKKLLIIIACILLLSSCSNGVDKGKLNKVGMLVPETINDQVWGTKGYKGLLNIQNNFDVDVYYKEGIENASAIEHAVSE
FKQKNVNLIFGHGVEYADTFNKIAKKYPTIHFVSFNGDATQKNTTSLRFEGHAMGFFGGMTAAHMSTTKKIGIIATHSWQ
PEIKGFVEGAKYEDPNITVLLKYTDNWDDGQKAVELLDKLLDEEVDVVYPAGDGFNVLVIEKIKEKGLYAIGYVSDQSDL
GKNTVLTSTIQQASKLYDIVAKKYAEGTLQSGNLSFDFQDGVIEMGKFSPRVDEKFQRKMKRFVKKYKETGELPK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=985744 MHI39_RS17730 WP_342539861.1 3525432..3526379(-) (med) [Heyndrickxia sp. FSL K6-6286]
ATGATAAAAAAGTTATTAATTATCATTGCCTGTATATTACTTTTATCAAGTTGCTCAAATGGGGTTGATAAAGGTAAACT
TAACAAGGTAGGAATGTTAGTACCTGAAACAATCAATGATCAAGTCTGGGGAACAAAAGGGTATAAGGGTCTGTTGAATA
TTCAAAATAATTTTGATGTCGATGTCTATTATAAAGAAGGAATTGAAAATGCGTCTGCCATCGAACATGCTGTCAGTGAA
TTTAAACAAAAAAATGTAAATTTAATTTTTGGACATGGAGTGGAATACGCGGATACTTTTAATAAAATAGCTAAAAAATA
TCCTACTATTCATTTCGTTAGCTTCAATGGGGATGCAACACAAAAAAATACAACTAGTTTAAGATTTGAAGGCCACGCAA
TGGGTTTTTTTGGTGGAATGACAGCGGCACATATGTCAACCACAAAAAAAATAGGTATTATTGCAACCCATAGCTGGCAG
CCAGAAATTAAAGGATTTGTTGAAGGCGCAAAATATGAGGATCCAAATATTACCGTCTTATTAAAGTATACTGATAATTG
GGATGATGGACAAAAAGCTGTAGAGCTTTTGGACAAATTATTAGATGAAGAAGTAGATGTGGTATACCCAGCTGGTGATG
GCTTTAATGTACTGGTCATTGAAAAAATTAAAGAAAAAGGTCTATATGCAATAGGCTATGTTTCAGATCAATCGGACTTA
GGGAAAAATACAGTTCTAACAAGTACGATTCAACAAGCAAGTAAGCTTTATGATATTGTCGCAAAAAAATATGCAGAGGG
TACTCTCCAATCAGGGAATCTTTCATTTGACTTCCAAGATGGTGTAATAGAAATGGGGAAATTCAGTCCCCGAGTTGACG
AAAAATTTCAAAGGAAAATGAAACGTTTTGTCAAAAAATATAAAGAAACAGGAGAATTACCAAAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(29-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

56.825

100

0.568

Multiple sequence alignment