Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACOAKG_RS13645 Genome accession   NZ_CP184261
Coordinates   3059223..3061151 (+) Length   642 a.a.
NCBI ID   WP_330354051.1    Uniprot ID   -
Organism   Streptomyces sp. JL3001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3054223..3066151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOAKG_RS13630 (ACOAKG_13630) - 3055377..3055685 (+) 309 WP_125525786.1 YtxH domain-containing protein -
  ACOAKG_RS13635 (ACOAKG_13635) - 3055837..3057291 (+) 1455 WP_330354049.1 xylulokinase -
  ACOAKG_RS13640 (ACOAKG_13640) rcrP 3057490..3059223 (+) 1734 WP_330354050.1 ABC transporter ATP-binding protein Regulator
  ACOAKG_RS13645 (ACOAKG_13645) rcrQ 3059223..3061151 (+) 1929 WP_330354051.1 ABC transporter ATP-binding protein Regulator
  ACOAKG_RS13650 (ACOAKG_13650) - 3061197..3062501 (-) 1305 WP_330354058.1 RNA polymerase sigma factor -
  ACOAKG_RS13655 (ACOAKG_13655) dnaG 3062615..3064516 (-) 1902 WP_330354059.1 DNA primase -
  ACOAKG_RS13660 (ACOAKG_13660) - 3064546..3065811 (-) 1266 WP_330354060.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69980.47 Da        Isoelectric Point: 6.1488

>NTDB_id=985719 ACOAKG_RS13645 WP_330354051.1 3059223..3061151(+) (rcrQ) [Streptomyces sp. JL3001]
MAGPMGRMMAGGGPDQRSLDFKVSGRRLIARFKPERITIYVLLFCVVVSVGLSVAGPKILGEATDLVFAGIVGRQFKSGM
TKEQVLAAMRERGDDQIADMLRSTDFTPGQGIDFGAVGNILLFALAVFTVAGLLMAVATRLVNRAVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSFFVATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHTLVKVFGRQEESARQFAEQNDALYEAGFKAQFNSGVMQPLMLFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQQADPVPGVRPEELRGRVALE
GVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSSGRITLDGVDISRMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDITRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHSELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=985719 ACOAKG_RS13645 WP_330354051.1 3059223..3061151(+) (rcrQ) [Streptomyces sp. JL3001]
ATGGCCGGGCCCATGGGACGGATGATGGCCGGCGGCGGGCCCGATCAGCGGTCGCTGGACTTCAAGGTGTCGGGCCGGCG
GCTGATCGCGCGGTTCAAGCCCGAGCGGATCACCATCTACGTGCTGCTGTTCTGCGTGGTGGTGAGCGTGGGCCTGTCGG
TCGCCGGGCCGAAGATCCTCGGCGAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGCCAGTTCAAGTCCGGGATG
ACCAAGGAACAGGTCCTCGCGGCCATGCGGGAGCGCGGCGACGACCAGATCGCCGACATGCTGCGCAGCACCGACTTCAC
GCCCGGCCAGGGCATCGACTTCGGGGCCGTGGGGAACATCCTGCTGTTCGCGCTGGCCGTGTTCACCGTCGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTGAACCGCACGATGTACCGGATGCGCGAGGACGTCCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGTGAGGTGCTGTCGCGGGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTGATCAACTCGGTGCTGACGATCATCGGTGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCTTCGTCGCCACGCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGTACGACCGGCAAGCTCAACGCGCACGTGGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCCAGGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGCTGTTCGTCTCCAACCTGAACTACGTCCTGGTCGCC
GTGGTCGGCGGACTGCGGGTCGCCTCGGGTTCGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCAGAGCGGGTCTTCGAGC
TCCTCGACGCGGAGGAGCAGCAGGCGGACCCGGTGCCGGGGGTGCGGCCGGAGGAGCTGCGGGGCCGGGTGGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAACCCGGGCACACGGTCGC
GATCGTGGGGCCGACAGGTGCCGGCAAGACGACCCTGGTCAACCTGCTGATGCGCTTCTACGACGTGTCGTCCGGACGGA
TCACCCTCGACGGCGTGGACATCTCCCGGATGTCGCGGGACGAGCTGCGCGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCCGAGAACATCGCCTACGGGGCGTCCCGGGACATCACCCGCGGCGAGATCGAGGAGGC
CGCGCGGGCCGCCCACGCCGACCGGTTCATCCGTACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGGTCGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCGATCGTCGAACAGG
GCGCCCACAGCGAGCTGTTGGCGGCCGACGGGGCGTATGCGCGGCTGTACAAGGCACAGTTCGCGCAGGCGGTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.088

92.523

0.389