Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACOAKG_RS13640 Genome accession   NZ_CP184261
Coordinates   3057490..3059223 (+) Length   577 a.a.
NCBI ID   WP_330354050.1    Uniprot ID   -
Organism   Streptomyces sp. JL3001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3052490..3064223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOAKG_RS13610 (ACOAKG_13610) - 3052856..3054643 (-) 1788 WP_406255334.1 cation:proton antiporter -
  ACOAKG_RS13630 (ACOAKG_13630) - 3055377..3055685 (+) 309 WP_125525786.1 YtxH domain-containing protein -
  ACOAKG_RS13635 (ACOAKG_13635) - 3055837..3057291 (+) 1455 WP_330354049.1 xylulokinase -
  ACOAKG_RS13640 (ACOAKG_13640) rcrP 3057490..3059223 (+) 1734 WP_330354050.1 ABC transporter ATP-binding protein Regulator
  ACOAKG_RS13645 (ACOAKG_13645) rcrQ 3059223..3061151 (+) 1929 WP_330354051.1 ABC transporter ATP-binding protein Regulator
  ACOAKG_RS13650 (ACOAKG_13650) - 3061197..3062501 (-) 1305 WP_330354058.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62705.76 Da        Isoelectric Point: 6.5095

>NTDB_id=985718 ACOAKG_RS13640 WP_330354050.1 3057490..3059223(+) (rcrP) [Streptomyces sp. JL3001]
MLIRLLRTHLSPYRKPITLLVLLQFLQTCATLYLPTLNADIIDKGVVNGDTGYILSYGALMIGISLAQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGISVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQSRFQKANAGLTDMALGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVRELRRHGHLEIQGGGFRYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGRVLVDGEDVA
RIDPQLLAKTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKEFVDRLEGGLNAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALQRETSEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=985718 ACOAKG_RS13640 WP_330354050.1 3057490..3059223(+) (rcrP) [Streptomyces sp. JL3001]
GTGCTCATACGACTTCTGCGGACCCACCTCAGTCCGTACCGAAAACCCATCACCTTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACTCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAAGGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTCTACTACGGCGCC
CGCACCGCCTCGGCGCTCGGCCGGGACGTACGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGTGAGCTCGG
CCACTTCGGCGCGCCGTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGGATCGTGCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCCACCCTCGGCATCAGCGTGACCCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACCATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGCGACG
AGTACGAGCAGAGCCGGTTCCAGAAGGCGAACGCCGGGCTGACCGACATGGCGCTGGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTGTGGTTCGGCGCCCACCGCATCGACTCGGG
CGGCATGCAGATCGGTGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCTCCTCCAGCGTGGTGCCG
CCGACCGCGCCGGTGCGGGAGCTGCGCCGGCACGGTCATCTGGAGATCCAGGGCGGCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGTCCATCGACCTGGTCGCGCGGCCGGGCGAGACGACGGCCGTGATCGGCTCGACGGGCAGCGGCA
AGTCGACCCTGCTGGGGCTGGTCCCCCGGCTCTTCGACGCGACCGACGGCCGGGTGCTGGTGGACGGGGAGGACGTGGCG
AGGATCGACCCGCAGCTCCTCGCGAAGACCGTCGGCCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGGACGGTGGCGAC
CAACCTCCGTTACGGCAATCCGGAGGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGACCGTCTGGAGGGCGGGCTGAACGCGCCCGTCGCACAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCCGCCCTGCGCACCGCGCTCCAGCGTGAGACGTCCGAGGCGACCGTCGTCATCGTCGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTACTGGACGAGGGCCGGGTCGTCGGCACGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.362

97.747

0.385