Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MHI39_RS05945 Genome accession   NZ_CP152029
Coordinates   1193791..1195173 (+) Length   460 a.a.
NCBI ID   WP_342540892.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188791..1200173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS05920 (MHI39_05920) treR 1189340..1190056 (+) 717 WP_259549209.1 trehalose operon repressor -
  MHI39_RS05925 (MHI39_05925) - 1190196..1190765 (+) 570 WP_180212406.1 nuclear transport factor 2 family protein -
  MHI39_RS05930 (MHI39_05930) - 1190867..1191532 (-) 666 WP_259549210.1 DUF2569 domain-containing protein -
  MHI39_RS05935 (MHI39_05935) gnd 1191802..1192698 (+) 897 WP_259549211.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  MHI39_RS05940 (MHI39_05940) - 1192899..1193741 (+) 843 WP_259549212.1 DegV family protein -
  MHI39_RS05945 (MHI39_05945) comFA 1193791..1195173 (+) 1383 WP_342540892.1 DEAD/DEAH box helicase Machinery gene
  MHI39_RS05950 (MHI39_05950) - 1195166..1195876 (+) 711 WP_259549288.1 ComF family protein -
  MHI39_RS05955 (MHI39_05955) - 1195957..1196355 (+) 399 WP_251345382.1 TIGR03826 family flagellar region protein -
  MHI39_RS05960 (MHI39_05960) flgM 1196686..1196946 (+) 261 WP_342540894.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI39_RS05965 (MHI39_05965) - 1196962..1197453 (+) 492 WP_259549290.1 flagellar protein FlgN -
  MHI39_RS05970 (MHI39_05970) flgK 1197484..1199154 (+) 1671 WP_259549291.1 flagellar hook-associated protein FlgK -
  MHI39_RS05975 (MHI39_05975) flgL 1199169..1200047 (+) 879 WP_342540895.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52220.38 Da        Isoelectric Point: 9.3243

>NTDB_id=985714 MHI39_RS05945 WP_342540892.1 1193791..1195173(+) (comFA) [Heyndrickxia sp. FSL K6-6286]
MTQPFSQELQTFLSGRKLLLTEIPFPKALIQKHLDNKFIASLPGITQNNKFQCERCGNTFPYLFAQFPCANCQTNCTYCR
NCLIMGRVSTCTPLYHWIGPPPEMDLTESTLEWSGTLSHGQQTASKRVIEAVHTRSELLVWAVCGAGKTEVLFEGINEAL
KQKQRVCIATPRTDVVLELAPRLQKVFPTIQVVALYGGSEDRNQFSPLTISTTHQLFRFYHGFDLMIVDEVDAFPYSYDH
TLQWAVQKAAKNNATKVYLSATPNQIWQQECLSGKRPYVTIPARFHRQPLPIPEFAWCGNWKKSFEKGKLPPKIEKWIKA
RLQANKQALIFLPNIKLMEKIAPLFQQLHSNIETVHAEDPNRKEKVERMRKKETPALLTTTILERGVTFPNIDVAIVGAE
DGIFTEEALVQISGRVGRSAQYPKGTITFFHHGKTMAMNRAYSHIVQMNKEARGRGLIDA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=985714 MHI39_RS05945 WP_342540892.1 1193791..1195173(+) (comFA) [Heyndrickxia sp. FSL K6-6286]
ATGACTCAGCCATTCTCACAAGAACTTCAAACCTTTCTCTCAGGACGTAAACTCCTCTTAACTGAAATTCCCTTTCCGAA
AGCACTTATCCAAAAACATCTCGACAATAAATTCATTGCCTCTCTACCAGGAATTACCCAAAATAACAAATTTCAATGTG
AACGTTGCGGAAACACGTTTCCATATCTTTTTGCGCAATTCCCATGTGCGAATTGCCAAACAAACTGTACTTATTGTCGG
AATTGCCTCATAATGGGACGAGTCTCCACTTGTACACCTCTTTACCATTGGATTGGTCCCCCACCAGAAATGGACCTAAC
AGAATCCACTTTAGAGTGGAGTGGTACCCTATCCCATGGACAACAAACGGCGTCTAAGCGTGTCATTGAAGCGGTTCATA
CAAGATCTGAGCTTTTGGTTTGGGCGGTATGTGGAGCAGGAAAAACAGAAGTACTTTTCGAAGGCATCAATGAAGCGTTA
AAGCAAAAACAGCGGGTATGCATCGCAACTCCAAGGACAGATGTTGTCCTAGAGCTCGCACCTAGACTACAAAAGGTATT
TCCCACTATCCAAGTTGTGGCCCTTTATGGTGGGAGTGAGGATCGAAACCAATTTTCTCCACTGACAATCTCCACCACCC
ATCAATTATTTCGATTCTACCATGGATTTGATCTCATGATTGTCGATGAAGTTGACGCCTTTCCATATTCCTATGATCAT
ACCCTGCAATGGGCAGTGCAAAAAGCTGCAAAAAATAATGCGACAAAAGTCTACTTATCAGCAACTCCAAACCAAATATG
GCAACAGGAATGCCTCTCTGGAAAACGTCCCTATGTCACCATCCCCGCAAGATTCCATCGTCAACCATTGCCAATACCTG
AATTTGCTTGGTGTGGCAATTGGAAAAAGTCCTTTGAAAAAGGGAAACTTCCTCCGAAAATTGAGAAGTGGATCAAAGCA
AGATTGCAAGCAAATAAGCAAGCATTAATCTTTCTTCCAAACATCAAATTAATGGAAAAAATAGCCCCACTTTTTCAACA
ATTACATTCAAACATAGAAACGGTTCATGCTGAGGATCCCAATCGTAAGGAAAAAGTAGAAAGAATGCGGAAGAAAGAAA
CCCCTGCTCTACTCACTACGACGATTCTGGAGCGTGGTGTCACCTTTCCAAACATTGATGTCGCGATAGTAGGAGCGGAG
GATGGAATCTTTACCGAAGAAGCCCTCGTCCAAATTTCCGGCCGTGTTGGTAGAAGCGCCCAATATCCAAAGGGAACAAT
TACTTTTTTTCACCATGGTAAGACAATGGCAATGAATAGAGCATACAGCCATATCGTTCAGATGAATAAAGAAGCAAGAG
GAAGGGGATTGATTGATGCATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-419)

Type III restriction enzyme, res subunit (ResIII)

(117-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.334

97.609

0.491

Multiple sequence alignment