Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHI39_RS00540 Genome accession   NZ_CP152029
Coordinates   104118..105494 (+) Length   458 a.a.
NCBI ID   WP_058005939.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99118..110494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS00520 (MHI39_00520) - 99244..99705 (+) 462 WP_058005935.1 CtsR family transcriptional regulator -
  MHI39_RS00525 (MHI39_00525) - 99722..100270 (+) 549 WP_058005936.1 UvrB/UvrC motif-containing protein -
  MHI39_RS00530 (MHI39_00530) - 100267..101343 (+) 1077 WP_058005937.1 protein arginine kinase -
  MHI39_RS00535 (MHI39_00535) clpC 101356..103797 (+) 2442 WP_058005938.1 ATP-dependent protease ATP-binding subunit ClpC -
  MHI39_RS00540 (MHI39_00540) radA 104118..105494 (+) 1377 WP_058005939.1 DNA repair protein RadA Machinery gene
  MHI39_RS00545 (MHI39_00545) disA 105499..106572 (+) 1074 WP_071976246.1 DNA integrity scanning diadenylate cyclase DisA -
  MHI39_RS00550 (MHI39_00550) - 106719..107813 (+) 1095 WP_058005941.1 PIN/TRAM domain-containing protein -
  MHI39_RS00555 (MHI39_00555) ispD 107848..108537 (+) 690 WP_071976247.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHI39_RS00560 (MHI39_00560) ispF 108562..109047 (+) 486 WP_058005943.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50162.69 Da        Isoelectric Point: 6.8761

>NTDB_id=985707 MHI39_RS00540 WP_058005939.1 104118..105494(+) (radA) [Heyndrickxia sp. FSL K6-6286]
MAKKTTKFICQSCGYESAKWMGRCPGCNEWNKMVEEVEITGKPRKGAFIHSPVGEVTKATPITTIVSEQEERVLTDLKEL
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLSKDEHRVLYISGEESVKQTKLRADRLQISSDQLFVFSETNLEAIH
HTIQEISPQFVVIDSIQTIYHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDSVLYF
EGERHHSYRILRAVKNRFGSTNEMAIFEMKDYGLSEVENPSEIFLEERSKGASGSTVVASMEGTRPVLVEIQALISPSMF
GMPRRTGTGIDHNRVTLLMAVLEKRVGLLLQNHDAYLKVAGGIKIDEPAIDLAVMISIASSFKDQPTKADDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFRRAIIPSNNIGGWNFPKDIQVIGVSTVQEALQQALGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=985707 MHI39_RS00540 WP_058005939.1 104118..105494(+) (radA) [Heyndrickxia sp. FSL K6-6286]
ATGGCAAAAAAGACGACGAAATTTATTTGTCAGTCTTGTGGATATGAATCTGCTAAGTGGATGGGAAGATGCCCAGGATG
TAATGAGTGGAATAAAATGGTGGAAGAAGTCGAAATAACTGGGAAGCCTAGAAAAGGTGCATTCATTCATTCTCCTGTTG
GTGAAGTTACAAAAGCTACCCCTATTACCACAATAGTTTCTGAGCAAGAAGAAAGGGTATTAACAGACTTAAAGGAATTA
AATCGAGTGTTGGGTGGTGGAGTTGTTCCCGGTTCCCTTGTATTAATCGGTGGTGATCCAGGAATCGGTAAATCAACATT
ACTGCTTCAAGTTTCCTCCCAACTGTCTAAGGATGAACACCGAGTTTTATATATATCAGGAGAAGAATCAGTAAAACAAA
CGAAGCTACGCGCAGACCGTCTCCAAATATCGTCAGATCAATTGTTTGTGTTTTCGGAAACGAATTTAGAAGCAATTCAT
CATACTATCCAAGAGATTTCTCCACAATTTGTTGTGATCGATTCGATACAAACGATATATCACCCCGAGGTTACCTCTGC
CCCTGGTAGTGTATCACAAGTAAGAGAATGTACAGCGGAATTAATGAGAATTGCCAAAACAAAAGGAATTGCTATTTTCA
TTGTTGGGCATGTTACGAAAGAGGGCTCGATTGCGGGACCAAGATTATTAGAACATATGGTAGATTCGGTGCTTTACTTT
GAAGGAGAACGCCATCATTCTTATCGGATATTGAGGGCTGTGAAAAACCGTTTCGGTTCTACTAATGAAATGGCAATATT
TGAAATGAAGGATTATGGCTTATCTGAGGTTGAGAATCCATCAGAAATCTTTTTAGAAGAACGTTCAAAAGGGGCATCGG
GTTCAACCGTCGTCGCTTCCATGGAAGGGACACGTCCGGTCTTAGTAGAAATCCAAGCTCTAATATCCCCTTCAATGTTC
GGAATGCCAAGAAGAACAGGTACGGGGATTGATCATAATCGGGTGACATTGTTGATGGCTGTACTAGAAAAAAGAGTCGG
ATTATTATTGCAAAATCATGATGCCTACTTAAAGGTAGCAGGCGGAATTAAAATAGATGAACCTGCTATTGATCTAGCAG
TTATGATCAGCATTGCTTCTAGTTTTAAGGATCAACCGACAAAAGCAGATGATTGTATTATTGGTGAGGTTGGCCTGACA
GGAGAAGTAAGGCGAGTATCTCGCATCGAGCAAAGGGTTCAGGAAGCGGCAAAATTAGGTTTTCGAAGAGCTATCATTCC
AAGCAATAATATCGGTGGTTGGAATTTCCCGAAGGATATTCAAGTTATTGGAGTTTCCACTGTTCAAGAAGCTTTACAGC
AAGCTTTAGGAGGATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.783

100

0.751
  radA Streptococcus pneumoniae Rx1

62.144

99.782

0.62
  radA Streptococcus pneumoniae D39

62.144

99.782

0.62
  radA Streptococcus pneumoniae R6

62.144

99.782

0.62
  radA Streptococcus pneumoniae TIGR4

62.144

99.782

0.62
  radA Streptococcus mitis NCTC 12261

62.144

99.782

0.62
  radA Streptococcus mitis SK321

61.926

99.782

0.618

Multiple sequence alignment