Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACN6AT_RS24490 Genome accession   NZ_CP184255
Coordinates   5328121..5330043 (-) Length   640 a.a.
NCBI ID   WP_420080866.1    Uniprot ID   -
Organism   Streptomyces sp. JL4002     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5323121..5335043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6AT_RS24470 (ACN6AT_24465) - 5324152..5325105 (-) 954 WP_420079920.1 IS481 family transposase -
  ACN6AT_RS24475 (ACN6AT_24470) - 5325229..5326248 (-) 1020 WP_420080863.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  ACN6AT_RS24480 (ACN6AT_24475) - 5326245..5326826 (-) 582 WP_420080864.1 hypothetical protein -
  ACN6AT_RS24485 (ACN6AT_24480) rpoS 5326999..5328051 (+) 1053 WP_420080865.1 RNA polymerase sigma factor Regulator
  ACN6AT_RS24490 (ACN6AT_24485) rcrQ 5328121..5330043 (-) 1923 WP_420080866.1 ABC transporter ATP-binding protein Regulator
  ACN6AT_RS24495 (ACN6AT_24490) rcrP 5330040..5331773 (-) 1734 WP_420080867.1 ABC transporter ATP-binding protein Regulator
  ACN6AT_RS24500 (ACN6AT_24495) - 5331966..5333414 (-) 1449 WP_361594581.1 FGGY family carbohydrate kinase -
  ACN6AT_RS24505 (ACN6AT_24500) - 5333512..5333814 (-) 303 WP_361594579.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68753.37 Da        Isoelectric Point: 5.5749

>NTDB_id=985672 ACN6AT_RS24490 WP_420080866.1 5328121..5330043(-) (rcrQ) [Streptomyces sp. JL4002]
MSGPGGRMMMGPAQRSLDFKGSGKRLLGQLAQDRGKLWGMVLAVIGSVGCAVVGPKILGEATDLVFAGIVGREMPAGPTK
QQVLDGMRADGRGGMADMLAGTDFTPGRGIDFGAVGVVALWALLAFTLAGLLMLVATRLSNHVMNGTLYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTVPLSVVVAARIGKKS
QPQFVAQWKTTGALNAHIEEMYSGHTLVKVFGRQKESAAVFAEQNEALFRASFKAQLVSGLMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQEPDAEVPERPREVRGRVTFEKV
AFRYEPDRPLIENLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTRAELRGAIGMVLQDTWL
FGGTIAENIAYGASREVTRAEVEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGTHEELLAADGAYARLYSAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=985672 ACN6AT_RS24490 WP_420080866.1 5328121..5330043(-) (rcrQ) [Streptomyces sp. JL4002]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCCTGGACTTCAAGGGTTCGGGCAAGCGGCTGCT
GGGGCAGCTCGCCCAGGACCGGGGCAAGCTGTGGGGCATGGTCCTGGCCGTGATCGGCAGTGTCGGCTGCGCGGTGGTCG
GGCCGAAGATCCTCGGTGAGGCCACCGACCTGGTGTTCGCGGGGATCGTGGGCCGGGAGATGCCGGCCGGTCCGACCAAG
CAGCAGGTGCTGGACGGCATGCGCGCCGACGGCCGCGGCGGCATGGCGGACATGCTCGCCGGCACGGACTTCACCCCGGG
CCGCGGCATCGACTTCGGCGCGGTGGGCGTGGTGGCGCTGTGGGCGCTGCTGGCGTTCACGCTGGCCGGCCTGCTGATGC
TGGTCGCGACCCGGCTGTCGAACCACGTCATGAACGGCACCCTGTACCGGATGCGCGAGGAGCTGCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACCAACGACATCGACAACATCGG
GCAGACACTCCAGCAGACGATGGGGCAGCTGCTGAACTCGCTGCTGACCATCGTCGGCGTCCTCGCGATGATGTTCTGGA
TCTCTCCGCTGCTGGCGCTGGTGGCGCTGGTGACCGTGCCGCTCTCGGTCGTCGTCGCGGCGCGGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACGACCGGCGCGCTCAACGCGCACATCGAGGAGATGTACTCGGGGCACACCCT
GGTCAAGGTGTTCGGACGGCAGAAGGAGTCCGCCGCGGTCTTCGCCGAGCAGAACGAGGCGCTGTTCCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGCCTCATGCAGCCGGTGATGTTCTTCATATCGAACATCAACTACGTTCTGATCGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTCGCCTCGGCGGAGCGGGTCTACGAGCTGCTGG
ACGCGCCGGAGCAGGAGCCCGACGCCGAGGTGCCGGAGCGTCCGCGGGAGGTGCGCGGCCGGGTCACGTTCGAGAAGGTG
GCGTTCCGCTACGAGCCCGACCGGCCGCTGATCGAGAACCTCTCGCTGGCGGTCGAGCCCGGTCACACGGTCGCGATCGT
CGGCCCGACGGGTGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TGGACGGGGTGGACATCGCGAAGATGACCCGTGCGGAGCTGCGCGGTGCCATCGGCATGGTGCTCCAGGACACGTGGCTG
TTCGGCGGCACGATCGCCGAGAACATCGCGTACGGCGCCTCGCGCGAGGTGACGCGCGCCGAGGTCGAGGAGGCGGCGCG
GGCCGCGCACGCGGACCGCTTCGTCCGGACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCCGGGGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTCCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCGCACGGCCGGACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTGATCCTGGTGATGGAGAGCGGCGCGATAGTGGAACAGGGCACGC
ACGAGGAGCTGCTGGCCGCGGACGGTGCGTACGCCCGGCTGTACTCGGCGCAGTTCGCCCAGGCGGTCGCCGAAGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(47-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.514

97.188

0.394