Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACN6AT_RS21350 Genome accession   NZ_CP184255
Coordinates   4606657..4607634 (+) Length   325 a.a.
NCBI ID   WP_361594786.1    Uniprot ID   -
Organism   Streptomyces sp. JL4002     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4601657..4612634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6AT_RS21335 (ACN6AT_21330) - 4603031..4603711 (+) 681 WP_420080514.1 TetR/AcrR family transcriptional regulator -
  ACN6AT_RS21340 (ACN6AT_21335) - 4603774..4605306 (+) 1533 WP_361594790.1 MFS transporter -
  ACN6AT_RS21345 (ACN6AT_21340) - 4605492..4606259 (+) 768 WP_361594864.1 dioxygenase -
  ACN6AT_RS21350 (ACN6AT_21345) rpoS 4606657..4607634 (+) 978 WP_361594786.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACN6AT_RS21355 (ACN6AT_21350) - 4607749..4608705 (-) 957 WP_420080515.1 helix-turn-helix transcriptional regulator -
  ACN6AT_RS21360 (ACN6AT_21355) - 4608768..4610330 (+) 1563 WP_420080516.1 MFS transporter -
  ACN6AT_RS21365 (ACN6AT_21360) - 4610463..4611233 (-) 771 WP_420080517.1 DUF6227 family protein -
  ACN6AT_RS21370 (ACN6AT_21365) - 4611426..4612067 (+) 642 WP_420080518.1 vitamin K epoxide reductase family protein -
  ACN6AT_RS21375 (ACN6AT_21370) - 4612188..4612598 (-) 411 WP_361594776.1 rodlin -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36620.31 Da        Isoelectric Point: 5.0510

>NTDB_id=985663 ACN6AT_RS21350 WP_361594786.1 4606657..4607634(+) (rpoS) [Streptomyces sp. JL4002]
MATRAVARRQSTSSARAAGGEIADRDLVGMYLDEIARTPLLDAAREVELSQIIEAGVYARQILDGEAERKGEPPTREELE
ALAAEGERAKEIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYTKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDEGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=985663 ACN6AT_RS21350 WP_361594786.1 4606657..4607634(+) (rpoS) [Streptomyces sp. JL4002]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCTCGCGCTGCGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTCCTTGACGCAGCCAGGGAAGTGGAGCTCTCCCAGATCATCG
AGGCGGGCGTCTACGCCCGGCAGATCCTGGACGGTGAGGCAGAGCGGAAGGGGGAGCCCCCCACCCGCGAGGAGCTGGAG
GCGCTGGCCGCGGAGGGCGAGCGCGCCAAGGAGATCTTCATCCGCTCCAACCTCCGTCTCGTCGTCGCCGTCGCCCGCCG
CTACCCGCGCAGCGGGCTGCCCCTGCTGGACCTGATCCAGGAGGGCAACGCCGGTCTGGTCCGCGCCGTCGAGAAGTTCG
ACTACACCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACACGTTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGCATCCGCCGCGTCCAGCGCGAGTTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCCGAGATCGCCGCCGAGCTGGACTCCACGGAGAAGCGCGTCGGTGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCCGTGGACGACGAGGGCGACACGCAGTTCGGCGACCTCCTGGAGGACACC
TCGGCGATCTCGCCCGAGCAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTCGGCAAGCTCGACCA
GCGCACGGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACCCTGACCGAGGTCGGCAAGCAGC
ACGGCCTGACCCGGGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAGCGGATGGCGCGCGACACCGGC
TTCGACGCGGTCGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366

Multiple sequence alignment