Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACN6AT_RS16640 Genome accession   NZ_CP184255
Coordinates   3631078..3632490 (+) Length   470 a.a.
NCBI ID   WP_361592392.1    Uniprot ID   -
Organism   Streptomyces sp. JL4002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3626078..3637490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6AT_RS16625 (ACN6AT_16620) - 3627219..3628166 (-) 948 WP_420079995.1 Ppx/GppA family phosphatase -
  ACN6AT_RS16630 (ACN6AT_16625) - 3628347..3629096 (+) 750 WP_389076966.1 hypothetical protein -
  ACN6AT_RS16635 (ACN6AT_16630) - 3629147..3630922 (-) 1776 WP_420079996.1 BACON domain-containing protein -
  ACN6AT_RS16640 (ACN6AT_16635) radA/sms 3631078..3632490 (+) 1413 WP_361592392.1 DNA repair protein RadA Machinery gene
  ACN6AT_RS16645 (ACN6AT_16640) disA 3632771..3633895 (+) 1125 WP_030817598.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACN6AT_RS16650 (ACN6AT_16645) - 3633959..3634762 (-) 804 WP_420079997.1 hypothetical protein -
  ACN6AT_RS16655 (ACN6AT_16650) - 3634934..3635596 (+) 663 WP_420079998.1 phosphatase PAP2 family protein -
  ACN6AT_RS16660 (ACN6AT_16655) - 3635593..3636516 (+) 924 WP_420079999.1 A/G-specific adenine glycosylase -
  ACN6AT_RS16665 (ACN6AT_16660) - 3636780..3637346 (+) 567 WP_420080000.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49248.42 Da        Isoelectric Point: 8.0064

>NTDB_id=985649 ACN6AT_RS16640 WP_361592392.1 3631078..3632490(+) (radA/sms) [Streptomyces sp. JL4002]
MAARTSRSSAKDRPSFRCSECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAALPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPPGMKVTEVADMGDALRVLPRGRSRTPAKERAAE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=985649 ACN6AT_RS16640 WP_361592392.1 3631078..3632490(+) (radA/sms) [Streptomyces sp. JL4002]
ATGGCTGCCCGTACCTCTCGTTCATCCGCCAAGGACCGACCGTCCTTCCGCTGCTCCGAATGCGGCTGGACGACCGCGAA
GTGGCTCGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGATGGGCGCGCCCGCCGTGCGGACCACGGCCG
CCGGCCGGGTGTCGACGGCCGCGCTGCCGATCGCCCAGGTCGACGGGCGCACGGCGACCGCGCGCAGCACGGGCGTGGAC
GAGCTGGACCGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCCGTGGTGCTGCTGGCCGGCGAGCCCGGTGTGGGCAAGTC
GACGCTGCTGCTGGACGTCGCGGCGAAGGCGGCCAGTGACGAGCACCGCACGCTGTACGTGACGGGGGAGGAGTCGGCGA
GCCAGGTCCGGCTGCGGGCCGACCGCATCAACGCCCTGAGCGACCACCTCTACCTCGCCGCCGAGACCGACCTGTCCGCC
GTGCTCGGGCACCTCGACGCCGTGAAGCCCTCCCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGTGCGCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCGAAGGAGCGGGGGATGTCGA
CCCTGCTCGTCGGTCACGTGACCAAGGACGGGGCGATCGCCGGTCCGCGTCTGCTGGAGCACCTGGTGGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCGCGGCTGCGGCTGGTGCGCGGTGTGAAGAACCGCTACGGCGCGACGGACGAGGTCGG
CTGTTTCGAGCTGCACGACGAGGGGATCACCGGCCTCGCGGATCCGAGCGGGCTCTTCCTGACCCGGCGGGCCGAGGCGG
TCCCGGGGACCTGTCTGACGGTGACCCTGGAGGGGAAGCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACGGTGGACTCG
CAGATCCCCTCCCCCCGCCGGACCACCTCCGGTCTGGAGACCTCGCGCGTGTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACCGCGCTCGGCAAGCGCGACATCTACAGCGCCACGGTGGGCGGTGTGAAGCTCACCGAGCCGGCCGCGG
ACCTGGCGATCGCGCTGGCGCTGGCCTCCGCCGCGAGCGACGTGCCGCTCCCGAAGAACCTGGTGGCCATCGGCGAGGTC
GGGCTGGCCGGGGAGGTGCGGCGGGTGACGGGTGTCCAGCGGCGGCTGGCCGAGGCGCACCGGCTGGGCTTCACGCACGC
GCTGGTGCCGGCGGACCCGGGCAAGGTGCCGCCGGGGATGAAGGTCACCGAGGTCGCCGACATGGGGGACGCGCTGCGGG
TGCTGCCGCGCGGCCGGTCCCGTACGCCGGCGAAGGAGCGGGCCGCGGAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

96.383

0.428
  radA Streptococcus mitis NCTC 12261

43.584

96.17

0.419
  radA Streptococcus mitis SK321

44.495

92.766

0.413
  radA Streptococcus pneumoniae TIGR4

44.626

91.064

0.406
  radA Streptococcus pneumoniae Rx1

44.626

91.064

0.406
  radA Streptococcus pneumoniae D39

44.626

91.064

0.406
  radA Streptococcus pneumoniae R6

44.626

91.064

0.406

Multiple sequence alignment