Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN6AT_RS11335 Genome accession   NZ_CP184255
Coordinates   2507750..2509381 (-) Length   543 a.a.
NCBI ID   WP_420079472.1    Uniprot ID   -
Organism   Streptomyces sp. JL4002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2502750..2514381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6AT_RS11310 (ACN6AT_11305) rpsB 2503153..2504028 (-) 876 WP_365079721.1 30S ribosomal protein S2 -
  ACN6AT_RS11315 (ACN6AT_11310) - 2504280..2504840 (+) 561 WP_420079470.1 M23 family metallopeptidase -
  ACN6AT_RS11320 (ACN6AT_11315) - 2504916..2505473 (-) 558 WP_365079839.1 TetR/AcrR family transcriptional regulator -
  ACN6AT_RS11325 (ACN6AT_11320) whiG 2505526..2506362 (-) 837 WP_403628615.1 RNA polymerase sigma factor WhiG -
  ACN6AT_RS11330 (ACN6AT_11325) dprA 2506572..2507753 (-) 1182 WP_420079471.1 DNA-processing protein DprA -
  ACN6AT_RS11335 (ACN6AT_11330) comM 2507750..2509381 (-) 1632 WP_420079472.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN6AT_RS11340 (ACN6AT_11335) - 2509381..2509752 (-) 372 WP_365079733.1 YraN family protein -
  ACN6AT_RS11345 (ACN6AT_11340) - 2509861..2510169 (-) 309 WP_005311352.1 DUF2469 domain-containing protein -
  ACN6AT_RS11350 (ACN6AT_11345) - 2510225..2510731 (-) 507 WP_361604116.1 NUDIX hydrolase -
  ACN6AT_RS11355 (ACN6AT_11350) lepB 2510721..2511500 (-) 780 WP_420079473.1 signal peptidase I -
  ACN6AT_RS11360 (ACN6AT_11355) lepB 2511544..2512455 (-) 912 WP_420079474.1 signal peptidase I -
  ACN6AT_RS11365 (ACN6AT_11360) lepB 2512555..2513400 (-) 846 WP_420079475.1 signal peptidase I -
  ACN6AT_RS11370 (ACN6AT_11365) lepB 2513393..2514151 (-) 759 WP_420079476.1 signal peptidase I -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 56202.72 Da        Isoelectric Point: 7.4929

>NTDB_id=985633 ACN6AT_RS11335 WP_420079472.1 2507750..2509381(-) (comM) [Streptomyces sp. JL4002]
MGFARACSVALVGVDGVVVEVQADLEPGVAAFTLVGLPDKTLVESRDRVRAAVVNSGAAWPQKKLTVGLSPASVPKSGAG
FDLAVAAAVLGAAEVIDPAAIADLVLIGELGLDGRVRPVRGILPAVLAAAEAGHRHVVVPQQCAAEAALVPHVSVLGVRS
LRQLIAVLTDGPVPEEEPDGPPGRPDPMAAGLMVPGAALGTGLAPGRAGTDCTDFPDLADVTGQHTARRALEVAAAGGHH
LFLSGPPGAGKTMMAERLPWILPPLTRQDSVEVTAVHSVAGILPPGEPLVSRPPYCAPHHSATMQSLVGGGTGIPRPGAV
SLAHRGVLFLDEAAEFHGRALDALRQPLESGHVVIARAAGVVRLPARFLMVLAANPCPCGRHTLAGAGCECPPSVIRRYQ
ARLSGPLLDRVDLRVEVEPVTRGDLLGQGGRGEPTAAVADRVRDARERADARLAGTPWRLNSQVPGPELRSRWRTAPGAL
AQAERELERGLLTARGLDRVLRVAWTVADLRGKDRPETHDVCVALELRTGIARGALSVPGTGP

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=985633 ACN6AT_RS11335 WP_420079472.1 2507750..2509381(-) (comM) [Streptomyces sp. JL4002]
ATGGGGTTCGCGCGGGCCTGCTCGGTCGCCCTCGTCGGCGTCGACGGCGTGGTCGTCGAGGTGCAGGCGGACCTGGAGCC
CGGCGTCGCCGCCTTCACCCTGGTCGGTCTCCCCGACAAGACCCTGGTCGAGAGCCGGGACCGGGTGCGCGCCGCCGTGG
TCAACTCCGGCGCCGCCTGGCCGCAGAAGAAGCTCACGGTCGGGCTCAGCCCCGCCTCCGTACCGAAGTCCGGCGCCGGC
TTCGACCTGGCCGTCGCCGCGGCCGTCCTCGGGGCGGCCGAGGTGATCGACCCGGCGGCCATCGCCGACCTCGTGCTCAT
CGGCGAGCTGGGCCTGGACGGCCGGGTCCGGCCCGTCCGGGGCATCCTCCCGGCCGTCCTCGCCGCGGCCGAGGCCGGCC
ACCGGCACGTCGTCGTCCCGCAGCAGTGCGCCGCCGAGGCCGCGCTCGTGCCCCACGTGTCCGTCCTCGGCGTGCGCAGC
CTGCGCCAGCTGATCGCGGTCCTCACCGACGGGCCGGTCCCCGAGGAGGAACCGGACGGGCCTCCGGGCCGCCCCGACCC
CATGGCCGCCGGACTGATGGTCCCCGGCGCCGCCCTGGGCACGGGCCTCGCCCCCGGCCGGGCCGGCACGGACTGCACGG
ACTTCCCCGACCTCGCGGACGTCACCGGGCAGCACACGGCACGCCGCGCCCTGGAGGTGGCCGCCGCCGGAGGCCACCAC
CTCTTCCTCAGCGGGCCCCCGGGCGCGGGCAAGACGATGATGGCCGAGCGACTGCCGTGGATCCTGCCGCCCCTCACCCG
CCAGGACTCCGTGGAGGTCACCGCCGTCCACTCCGTCGCGGGGATCCTCCCGCCCGGAGAGCCGCTGGTCTCCAGGCCGC
CCTACTGCGCGCCGCACCACTCGGCGACCATGCAGTCCCTGGTGGGCGGCGGCACCGGGATCCCCCGCCCCGGGGCGGTC
TCCCTCGCACACCGGGGCGTCCTCTTCCTCGACGAGGCCGCGGAGTTCCACGGCCGGGCCCTGGACGCGCTGCGCCAGCC
CCTCGAATCGGGACACGTCGTCATCGCCCGCGCCGCCGGGGTGGTCCGGCTGCCCGCCCGGTTCCTCATGGTCCTCGCGG
CGAACCCATGCCCCTGCGGCCGCCACACGCTGGCCGGAGCAGGCTGCGAATGCCCGCCCTCGGTGATCCGCCGCTACCAG
GCGAGGCTGTCCGGACCCCTGCTCGACCGGGTCGACCTGCGCGTGGAGGTCGAGCCCGTCACCCGCGGCGACCTGCTCGG
GCAGGGCGGCCGCGGCGAGCCCACGGCCGCCGTCGCCGACCGGGTCCGGGACGCCAGGGAACGTGCCGACGCCCGGCTCG
CCGGCACCCCCTGGCGGCTCAACTCCCAAGTGCCCGGACCCGAACTGAGGAGCCGTTGGCGGACGGCCCCCGGGGCGCTG
GCCCAGGCCGAACGGGAGCTGGAGCGGGGACTGCTGACCGCACGCGGACTGGACCGGGTGCTGCGCGTCGCCTGGACCGT
GGCCGACCTGCGGGGGAAGGACCGGCCGGAGACCCATGACGTCTGCGTGGCACTGGAGTTGAGGACCGGGATCGCCCGCG
GGGCACTGTCCGTACCGGGAACGGGCCCATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(432-528)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(217-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40.152

97.238

0.39
  comM Vibrio cholerae strain A1552

40.741

94.475

0.385
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.741

94.475

0.385
  comM Acinetobacter baylyi ADP1

38.318

98.527

0.378
  comM Haemophilus influenzae Rd KW20

38.953

95.028

0.37
  comM Legionella pneumophila str. Paris

36.989

99.079

0.366
  comM Legionella pneumophila strain ERS1305867

36.989

99.079

0.366
  comM Glaesserella parasuis strain SC1401

37.218

97.974

0.365

Multiple sequence alignment