Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MHB66_RS05065 Genome accession   NZ_CP152027
Coordinates   1008144..1008722 (+) Length   192 a.a.
NCBI ID   WP_041117040.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0167     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003144..1013722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB66_RS05045 (MHB66_05045) - 1003638..1004933 (-) 1296 WP_024426546.1 globin-coupled sensor protein -
  MHB66_RS05050 (MHB66_05050) - 1005027..1006559 (-) 1533 WP_041117038.1 FAD-dependent oxidoreductase -
  MHB66_RS05055 (MHB66_05055) - 1006701..1007561 (+) 861 WP_034282185.1 SDR family oxidoreductase -
  MHB66_RS05060 (MHB66_05060) - 1007618..1007854 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  MHB66_RS05065 (MHB66_05065) comK 1008144..1008722 (+) 579 WP_041117040.1 competence protein ComK Regulator
  MHB66_RS05070 (MHB66_05070) - 1009021..1009503 (+) 483 WP_041117042.1 hypothetical protein -
  MHB66_RS05075 (MHB66_05075) - 1009786..1010061 (+) 276 WP_041117044.1 barstar family protein -
  MHB66_RS05080 (MHB66_05080) ceuB 1010223..1011173 (+) 951 WP_041117046.1 ABC transporter permease Machinery gene
  MHB66_RS05085 (MHB66_05085) - 1011166..1012116 (+) 951 WP_046310457.1 iron chelate uptake ABC transporter family permease subunit -
  MHB66_RS05090 (MHB66_05090) - 1012107..1012865 (+) 759 WP_041117050.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22292.33 Da        Isoelectric Point: 8.7962

>NTDB_id=985614 MHB66_RS05065 WP_041117040.1 1008144..1008722(+) (comK) [Bacillus sp. FSL L8-0167]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQAVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNKY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=985614 MHB66_RS05065 WP_041117040.1 1008144..1008722(+) (comK) [Bacillus sp. FSL L8-0167]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTTATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTTTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAACGAGCAAGCCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTCGATGGA
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAAGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGAAACAAATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609

Multiple sequence alignment