Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHH65_RS11050 Genome accession   NZ_CP152026
Coordinates   2175054..2176787 (-) Length   577 a.a.
NCBI ID   WP_024428012.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0654     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2170054..2181787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH65_RS11030 (MHH65_11030) - 2170930..2172030 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  MHH65_RS11035 (MHH65_11035) - 2172018..2172215 (-) 198 WP_024422934.1 hypothetical protein -
  MHH65_RS11040 (MHH65_11040) spo0A 2172487..2173290 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  MHH65_RS11045 (MHH65_11045) spoIVB 2173576..2174853 (-) 1278 WP_268413912.1 SpoIVB peptidase -
  MHH65_RS11050 (MHH65_11050) recN 2175054..2176787 (-) 1734 WP_024428012.1 DNA repair protein RecN Machinery gene
  MHH65_RS11055 (MHH65_11055) argR 2176821..2177270 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  MHH65_RS11060 (MHH65_11060) - 2177434..2178288 (-) 855 WP_252049573.1 TlyA family RNA methyltransferase -
  MHH65_RS11065 (MHH65_11065) dxs 2178285..2180186 (-) 1902 WP_335350902.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHH65_RS11070 (MHH65_11070) - 2180337..2181227 (-) 891 WP_061109341.1 polyprenyl synthetase family protein -
  MHH65_RS11075 (MHH65_11075) - 2181217..2181477 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64669.48 Da        Isoelectric Point: 4.7708

>NTDB_id=985575 MHH65_RS11050 WP_024428012.1 2175054..2176787(-) (recN) [Bacillus sp. FSL L8-0654]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEDIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELDQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=985575 MHH65_RS11050 WP_024428012.1 2175054..2176787(-) (recN) [Bacillus sp. FSL L8-0654]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGATCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCACCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGACATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AGGAAGAACGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCATATAACGCCTTGCGTAATGAG
CAAGGAGGGCTAGATTGGGTTGGTATGTCTTCAAGCGAGCTTGATCAGGTGTCTGAGATCAACGATGATTTGAAAAAGCT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGCTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCCCTGCTGGAAGCACTTAACGTTTCGGAACTGCGTAAAAAATGGGCCA
AAAAGCTAGCAAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTGCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGCATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCTAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TTAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCTGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.563

100

0.756

Multiple sequence alignment