Detailed information NTG0985556

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACLB14_RS05090
• Genome accession: NZ_CP184155
• Coordinates: 1050954..1051946 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1045954..1056946

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLB14_RS05060 (ACLB14_05060)	ispD	1046015..1046725 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACLB14_RS05065 (ACLB14_05065)	ispF	1046725..1047204 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACLB14_RS05070 (ACLB14_05070)	truD	1047201..1048250 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACLB14_RS05075 (ACLB14_05075)	surE	1048231..1048992 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACLB14_RS05080 (ACLB14_05080)	pcm	1048986..1049612 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACLB14_RS05085 (ACLB14_05085)	nlpD	1049797..1050891 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACLB14_RS05090 (ACLB14_05090)	rpoS	1050954..1051946 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACLB14_RS05095 (ACLB14_05095)	ygbN	1052040..1053404 (-)	1365	WP_000104441.1	GntP family transporter	-
ACLB14_RS05100 (ACLB14_05100)	ygbM	1053493..1054269 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACLB14_RS05105 (ACLB14_05105)	ygbL	1054274..1054912 (-)	639	WP_001278994.1	aldolase	-
ACLB14_RS05110 (ACLB14_05110)	otnK	1054909..1056171 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=985556 ACLB14_RS05090 WP_000081550.1 1050954..1051946(+) (rpoS) [Escherichia coli strain C21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=985556 ACLB14_RS05090 WP_000081550.1 1050954..1051946(+) (rpoS) [Escherichia coli strain C21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715