Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACLB5D_RS08850 Genome accession   NZ_CP184143
Coordinates   1760246..1761451 (+) Length   401 a.a.
NCBI ID   WP_001161835.1    Uniprot ID   -
Organism   Escherichia coli strain F11     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1755246..1766451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLB5D_RS08835 - 1755761..1757437 (+) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -
  ACLB5D_RS08840 kdsB 1757447..1758187 (+) 741 WP_000030759.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLB5D_RS08845 - 1758184..1760211 (+) 2028 WP_106476155.1 capsular polysaccharide biosynthesis protein -
  ACLB5D_RS08850 kpsS 1760246..1761451 (+) 1206 WP_001161835.1 capsule biosynthesis protein Regulator
  ACLB5D_RS08855 - 1761601..1762830 (-) 1230 WP_106476153.1 alpha-2,8-polysialyltransferase family protein -
  ACLB5D_RS08860 - 1762820..1763968 (-) 1149 WP_058905487.1 DUF6716 putative glycosyltransferase -
  ACLB5D_RS08865 neuC 1763961..1765136 (-) 1176 WP_000723250.1 UDP-N-acetylglucosamine 2-epimerase -
  ACLB5D_RS08870 - 1765133..1766389 (-) 1257 WP_001259305.1 cytidylyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 47858.21 Da        Isoelectric Point: 10.0398

>NTDB_id=985478 ACLB5D_RS08850 WP_001161835.1 1760246..1761451(+) (kpsS) [Escherichia coli strain F11]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNWVYYGGNTTNCQHNI
Y

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=985478 ACLB5D_RS08850 WP_001161835.1 1760246..1761451(+) (kpsS) [Escherichia coli strain F11]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGATGAAGACGCAGGTTAATTGGGTTTATTATGGGGGGAACACAACAAACTGCCAACATAATATA
TATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.007

0.387