Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHI23_RS11800 Genome accession   NZ_CP152024
Coordinates   2305666..2306436 (-) Length   256 a.a.
NCBI ID   WP_024423019.1    Uniprot ID   -
Organism   Bacillus sp. FSL M7-0003     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2300666..2311436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI23_RS11780 (MHI23_11780) - 2300758..2301579 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MHI23_RS11785 (MHI23_11785) - 2301605..2302243 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  MHI23_RS11790 (MHI23_11790) glyS 2302411..2304456 (-) 2046 WP_342491975.1 glycine--tRNA ligase subunit beta -
  MHI23_RS11795 (MHI23_11795) glyQ 2304449..2305336 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  MHI23_RS11800 (MHI23_11800) recO 2305666..2306436 (-) 771 WP_024423019.1 DNA repair protein RecO Machinery gene
  MHI23_RS11805 (MHI23_11805) - 2306472..2306615 (-) 144 WP_003217288.1 YqzL family protein -
  MHI23_RS11810 (MHI23_11810) era 2306764..2307669 (-) 906 WP_007501305.1 GTPase Era -
  MHI23_RS11815 (MHI23_11815) - 2307662..2308060 (-) 399 WP_008356263.1 cytidine deaminase -
  MHI23_RS11820 (MHI23_11820) - 2308174..2308560 (-) 387 WP_024423020.1 diacylglycerol kinase family protein -
  MHI23_RS11825 (MHI23_11825) ybeY 2308538..2309017 (-) 480 WP_342491976.1 rRNA maturation RNase YbeY -
  MHI23_RS11830 (MHI23_11830) - 2309018..2311132 (-) 2115 WP_342492473.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29307.95 Da        Isoelectric Point: 8.1204

>NTDB_id=985456 MHI23_RS11800 WP_024423019.1 2305666..2306436(-) (recO) [Bacillus sp. FSL M7-0003]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=985456 MHI23_RS11800 WP_024423019.1 2305666..2306436(-) (recO) [Bacillus sp. FSL M7-0003]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGTGTGATGGCCAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTCACCGCATATGCCGCATATATGACGGAATTGATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTGTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754

Multiple sequence alignment